CF834733

Overview
NameCF834733
Unique NameCF834733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF834733 vs. ExPASy Swiss-Prot
Match: CT030_CHICK (UPF0414 transmembrane protein C20orf30 homolog OS=Gallus gallus GN=RCJMB04_6c24 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.117e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = -3 
Query:  174 PIKEIVLAVFFLVFGTFGIICGPIMAYNRVG-GGRAPGVFFAVLGGILFIPGFYYTRIGYYAYKGYKGFSFNNIP 395
            P K I LAV   + GTF II G ++    +  GG    +   ++G ++F+PGFY+ RI YYA KGY+G+S+++IP
Sbjct:   42 PYKAIALAVVLFMIGTFLIIIGALLLAGYISKGGTDRAIPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIP 116
[Close]
BLAST of CF834733 vs. ExPASy Swiss-Prot
Match: CT030_RAT (UPF0414 transmembrane protein C20orf30 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = -3 
Query:  174 PIKEIVLAVFFLVFGTFGIICGPIMAYNRVG-GGRAPGVFFAVLGGILFIPGFYYTRIGYYAYKGYKGFSFNNIP 395
            P K I LA    + GTF II G ++    +  GG    V   ++G ++F+PGFY+ RI YYA KGY+G+S+++IP
Sbjct:   42 PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIP 116
[Close]
BLAST of CF834733 vs. ExPASy Swiss-Prot
Match: CT030_MOUSE (UPF0414 transmembrane protein C20orf30 homolog OS=Mus musculus PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = -3 
Query:  174 PIKEIVLAVFFLVFGTFGIICGPIMAYNRVG-GGRAPGVFFAVLGGILFIPGFYYTRIGYYAYKGYKGFSFNNIP 395
            P K I LA    + GTF II G ++    +  GG    V   ++G ++F+PGFY+ RI YYA KGY+G+S+++IP
Sbjct:   42 PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIP 116
The following BLAST results are available for this feature:
BLAST of CF834733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CT030_CHICK2.117e-1142.67UPF0414 transmembrane protein C20orf30 homolog OS=... [more]
CT030_RAT4.715e-1142.67UPF0414 transmembrane protein C20orf30 homolog OS=... [more]
CT030_MOUSE4.715e-1142.67UPF0414 transmembrane protein C20orf30 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06A14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834733 ID=CF834733; Name=CF834733; organism=Citrus sinensis; type=EST; length=433bp
TTTTTTTTTTTTTTTTTCCAAAATAACCGCCCCTTAAGACCCATATTAGN
AACCAATATACACAAATATTCCCCTTACAAAAATAAAAATCAATATTCCC
AAAAAAAAAAAAAAAGACAAAGTACAACTTGGGGGGAGATCTGTACCTTG
AGAAAAAAATCACCTCAAACAGAAGGTATATTATTGAAAGAAAAGCCTTT
GTATCCCTTGTACGCATAATACCCAATTCGGGTATAATAAAATCCCGGTA
TAAACAAAATCCCGCCCAGTACTGCAAAAAAAACCCCGGGAGCGCGGCCA
CCGCCGACTCTGTTGTAGGCCATGATGGGGCCGCAAATGATGCCAAAAGT
GCCAAAAACAAGGAAAAAAACGGCAAGGACAATCTCTTTGATCGGAGGCC
AATTGTTGACGGGGAATGATGTCCCCATCATTA
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