CF834748

Overview
NameCF834748
Unique NameCF834748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10292 contig Csv1_Contig10292:608..1328. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.253e-41
Identity = 95/218 (43.58%), Postives = 125/218 (57.34%), Query Frame = 3
Query:    3 IMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLFG 656
            IMVVSVTASTT G+ L E+ L++                    +VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS+ +     GY+  ++I QS PP LR +A RL+AAK TLAARVDS      G  G   ++EI +K +KWQE                                  +T++RK ANRM FG
Sbjct:  164 IMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFG 381          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.792e-41
Identity = 94/218 (43.12%), Postives = 125/218 (57.34%), Query Frame = 3
Query:    3 IMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLFG 656
            IMVVSVTASTT G+ L ++ L++                    +VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS+ +     GY+  ++I QS PP LR +A RL+AAK TLAARVDS      G  G   ++EI +K +KWQE                                  +T++RK ANRM FG
Sbjct:  164 IMVVSVTASTTQGQQLSDEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFG 381          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_XENLA (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.061e-40
Identity = 95/218 (43.58%), Postives = 124/218 (56.88%), Query Frame = 3
Query:    3 IMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLFG 656
            IMVVSVTASTT G+ L ++ L++                    +VESRMS+IAPNLS IVG++ AAK+MG AGGL+ L+KMPACNV LLGA++K L GFS+ +     GY+  +EI QS P  L  +A RL++AK TLA+RVDS   +P G  G   +EEI +K +KWQE                                  +T++RK ANRM FG
Sbjct:  163 IMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLTGFSSTSVLPHTGYIYHSEIVQSLPSDLHRKAARLVSAKCTLASRVDSFHENPEGKIGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFG 380          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_XENTR (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.032e-40
Identity = 94/217 (43.32%), Postives = 123/217 (56.68%), Query Frame = 3
Query:    3 IMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLF 653
            IMVVSVTASTT G+ L ++ L++                    +VESRMS+IAPNLS IVG++ AAK+MG AGGL+ L+KMPACNV LLGA++K L+GFS+ +     GY+  ++I QS PP L  +A RL++AK TLAARVDS      G  G   +EEI +K +KWQE                                  +T++RK ANRM F
Sbjct:  163 IMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLHRKAARLVSAKCTLAARVDSFHESSEGKVGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSF 379          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_DANRE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.001e-39
Identity = 92/217 (42.40%), Postives = 122/217 (56.22%), Query Frame = 3
Query:    3 IMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLF 653
            IMVVSVTASTT G  L +D LQ+                    +VESRMS+IAPNLS IVG++ AAK+MG AGGL+ L+KMPACN+ LLGA+++ L+GFS+ +     GY+   ++ Q+ PP LR +A RL++AK TLA+RVDS      G  G   +EEI +K +KWQE                                  +T++RK ANRM F
Sbjct:  175 IMVVSVTASTTQGTMLGDDELQRLEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGVAGGLTNLSKMPACNLMLLGAQRRTLSGFSSTSLLPHTGYIYHCDVVQTLPPDLRRKAARLVSAKCTLASRVDSFHESADGKVGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKHANRMTF 391          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_SCHPO (Pre-mRNA-processing factor 31 OS=Schizosaccharomyces pombe GN=prp31 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.118e-37
Identity = 84/218 (38.53%), Postives = 118/218 (54.13%), Query Frame = 3
Query:    3 IMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLFG 656
            +MV++ TA+TT GKPLP+++++                     +V+SR+S +APNLSA+VGS  AA L+G AGGL+ L K PACN+  LG ++    G +        G+L  +EI Q TPP +R +A R+ AAK  LAAR+DS    P G+ G S R+E+ +KIEK  E             D  P               YAVT++R+L NR+ FG
Sbjct:  188 VMVIATTATTTVGKPLPDEMIKNVKNCCEAIQQLGEEKQKIIEYVQSRISVVAPNLSAVVGSTTAANLIGIAGGLTRLGKFPACNLPALGKRRLTTIGINNPAVSGDYGFLYMSEIVQKTPPDVRKQAIRMTAAKVALAARIDSIHEYPDGSFGISARKEVERKIEKLLEPPSQKPTVALPVPDDRPKRRRGGRRIRKMKEQYAVTELRRLQNRVAFG 405          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: PRP31_YEAST (Pre-mRNA-processing factor 31 OS=Saccharomyces cerevisiae GN=PRP31 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 52/178 (29.21%), Postives = 87/178 (48.88%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFR-VGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS--TRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLFG 656
            ++ S++S IAPN+  +VG  +AA+L+  AGG+   +++P+CN+  +G  K       T  S  R  GYL  +++ Q  P  +  +  R+L AK +LAARVD+    GD +      ++ E+ KK  K  E             + +P               + ++ +R+L NRM FG
Sbjct:  217 YIASKISIIAPNVCFLVGPEIAAQLIAHAGGVLEFSRIPSCNIASIGKNKHLSHELHTLESGVRQEGYLFASDMIQKFPVSVHKQMLRMLCAKVSLAARVDAGQKNGDRNTVLAHKWKAELSKKARKLSEAPSISETKALPIPEDQPKKKRAGRKFRKYKEKFRLSHVRQLQNRMEFG 394          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: YZVL_CAEEL (Uncharacterized NOP5 family protein K07C5.4 OS=Caenorhabditis elegans GN=K07C5.4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIE 500
            +++ RM + AP+LSA++G  V A+L+  AG L+ LAK PA  VQ+LGA+K       T ++  + G L  +          + R  R LA K ++AARVD     P  T G   R+++  ++E
Sbjct:  290 YIKDRMDHCAPSLSALIGEQVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRSNTPKYGLLFHSSFIGKAGTKNKGRVSRYLANKCSIAARVDCFSETPVSTYGEFLRQQVEDRLE 412          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP56_PONAB (Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQ 509
            ++ S+MS +AP+LSA++G AV A+L+  AG L+ LAK PA  VQ+LGA+K       T  +  + G +  +          + R  R LA K ++A+R+D     P+   G   RE++ +++  ++
Sbjct:  284 YLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE 409          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP56_MOUSE (Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQ 509
            ++ S+MS +AP+LSA++G AV A+L+  AG L+ LAK PA  VQ+LGA+K       T  +  + G +  +          + R  R LA K ++A+R+D     P+   G   RE++ +++  ++
Sbjct:  284 YLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE 409          
The following BLAST results are available for this feature:
BLAST of CF834748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PRP31_HUMAN1.253e-4143.58U4/U6 small nuclear ribonucleoprotein Prp31 OS=Hom... [more]
PRP31_MOUSE2.792e-4143.12U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus... [more]
PRP31_XENLA1.061e-4043.58U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
PRP31_XENTR4.032e-4043.32U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
PRP31_DANRE2.001e-3942.40U4/U6 small nuclear ribonucleoprotein Prp31 OS=Dan... [more]
PRP31_SCHPO7.118e-3738.53Pre-mRNA-processing factor 31 OS=Schizosaccharomyc... [more]
PRP31_YEAST9.046e-1629.21Pre-mRNA-processing factor 31 OS=Saccharomyces cer... [more]
YZVL_CAEEL2.228e-1434.96Uncharacterized NOP5 family protein K07C5.4 OS=Cae... [more]
NOP56_PONAB6.483e-1432.54Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2... [more]
NOP56_MOUSE6.483e-1432.54Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834748 ID=CF834748; Name=CF834748; organism=Citrus sinensis; type=EST; length=721bp
TTATCATGGTGGTGTCCGTCACAGCATCAACTACAAGTGGCAAACCACTT
CCAGAAGATGTCCTTCAAAAGACAATTGATGCATGTGATCGAGCTCTTGC
ACTTGATGCAGCAAAGAAGAAGGTCCTTGATTTTGTAGAAAGCAGGATGA
GCTATATTGCGCCCAATCTATCTGCAATTGTTGGCAGTGCTGTTGCAGCA
AAACTCATGGGAACGGCTGGTGGTCTCTCAGCATTAGCTAAGATGCCTGC
TTGTAACGTTCAGCTTCTTGGCGCAAAGAAAAAGAATCTTGCTGGTTTTT
CTACTGCAACATCTCAATTCCGTGTAGGTTATCTTGAGCAGACAGAGATA
TTTCAAAGTACACCTCCACCTCTAAGGATGCGTGCCTGCCGACTCTTGGC
TGCAAAATCAACACTTGCAGCACGTGTTGATTCTACTAGAGGAGATCCTT
CTGGAACTGCTGGGAGGTCATTCAGAGAAGAGATTCACAAGAAAATTGAA
AAGTGGCAAGAGCCTCCTCCTGCAAAGCAACCTAAACCTCTTCCAGTTCC
TGATTCTGAGCCTAAAAAGAAGAGGGGTGGTCGACGGTTAAGGAAGATGA
AAGAAAGATATGCTGTAACAGATATGAGAAAGCTGGCTAATAGAATGCTA
TTTGGTGTACCTGAAGAAAGTTCCTTAGGTGATGGATTGGGAGAGGGTTA
TGGAATGCTTGGTCAAGCTGG
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