CF834749

Overview
NameCF834749
Unique NameCF834749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:88..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 9.048e-61
Identity = 113/117 (96.58%), Postives = 117/117 (100.00%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNVEKKDP
Sbjct:  318 KDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 434
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.490e-60
Identity = 110/117 (94.02%), Postives = 117/117 (100.00%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  318 KDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.659e-60
Identity = 111/117 (94.87%), Postives = 116/117 (99.15%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  318 KDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.000e-59
Identity = 109/117 (93.16%), Postives = 117/117 (100.00%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA++AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  318 KDDPAKDAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.306e-59
Identity = 110/117 (94.02%), Postives = 116/117 (99.15%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA+EAANFT+QVII+NHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNVEKKDP
Sbjct:  318 KDDPAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 434
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.801e-59
Identity = 110/117 (94.02%), Postives = 115/117 (98.29%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  318 KDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.468e-59
Identity = 108/117 (92.31%), Postives = 116/117 (99.15%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNV+KKDP
Sbjct:  318 KDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDP 434
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 108/117 (92.31%), Postives = 115/117 (98.29%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA+ AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSE++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDP
Sbjct:  318 KDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDP 434
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.218e-58
Identity = 106/117 (90.60%), Postives = 116/117 (99.15%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA+ AA+FT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGV+KNV+KKDP
Sbjct:  318 KDDPAKGAASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDP 434
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.203e-58
Identity = 108/117 (92.31%), Postives = 113/117 (96.58%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA+EAANFT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  318 KDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
The following BLAST results are available for this feature:
BLAST of CF834749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
EF1A_ORYSJ9.048e-6196.58Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_VICFA4.490e-6094.02Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_MAIZE7.659e-6094.87Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_PEA1.000e-5993.16Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_SOYBN1.306e-5994.02Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_MANES3.801e-5994.02Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_TOBAC8.468e-5992.31Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_ARATH1.445e-5892.31Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_SOLLC3.218e-5890.60Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A2_DAUCA4.203e-5892.31Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834749 ID=CF834749; Name=CF834749; organism=Citrus sinensis; type=EST; length=706bp
CTCGAGTTTTCTTTTTTTTTTTTTTGAACCATCAAAAACAGTCGCCCATT
CTCTCAGGGCAAAATTTAATACAACACCTACAAAATATATGAGCACCGAC
TAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAACAAAATGTTTG
ACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAAACTCTGATATAAA
ACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACG
ACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAGATAGAT
CCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGTGACCTTGGCA
CCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGT
CTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGGGTAGTCAGAGA
AGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAACCATTCCAGCA
TCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCG
CCTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGG
TGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGG
TTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGATC
ATCCTT
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