CF834752

Overview
NameCF834752
Unique NameCF834752
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8361 contig Csv1_Contig8361:526..1020. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834752 vs. ExPASy Swiss-Prot
Match: BCHH_RHOS4 (Magnesium-chelatase subunit H OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.234e-20
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = -1
Query:  205 GYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIEGI 489
            G EGVR+IE ++TNT+GWSAT+ QV+ WVY+  + TF+ DE M  RL   NP +  ++ +  LEA+ R YW+   E +  L+    E+ED++EGI
Sbjct: 1096 GAEGVRQIEAQVTNTLGWSATTQQVEPWVYQRLSETFVLDEAMRRRLAELNPEASVRMAERLLEASARNYWQPDAETLAALQGAADELEDRLEGI 1190          
BLAST of CF834752 vs. ExPASy Swiss-Prot
Match: BCHH_RHOCA (Magnesium-chelatase subunit H OS=Rhodobacter capsulatus GN=bchH PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.075e-19
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = -1
Query:  205 GYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIEGI 489
            G EGVR+IE ++TNT+GWSAT+GQV+ WVY+  + TF+ D+EM  RL + N  +  ++ Q  LEA+ R YW+     +  L+    E+ED++EG+
Sbjct: 1097 GAEGVRQIEAQVTNTLGWSATTGQVEPWVYQRLSETFVLDDEMRERLASLNSAASSRMAQRLLEASDRNYWQPDPATLAALQAAADELEDRMEGV 1191          
BLAST of CF834752 vs. ExPASy Swiss-Prot
Match: BCHH_CHLP8 (Magnesium-chelatase subunit H OS=Chlorobaculum parvum (strain NCIB 8327) GN=bchH PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.649e-18
Identity = 38/95 (40.00%), Postives = 62/95 (65.26%), Query Frame = -1
Query:  205 GYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIEGI 489
            G+ G  EI  R+T  +GW A +  VD+WVY++   T+  D EM  RL   NP + + +V   LEA+GRG W+  +  IE+L+++Y+++ED++EG+
Sbjct: 1174 GHSGAGEISNRVTYMLGWDAVTKSVDDWVYKKTAETYALDPEMRERLATLNPQAIKNIVGRMLEAHGRGMWKADQSMIEELQEIYADLEDRLEGM 1268          
BLAST of CF834752 vs. ExPASy Swiss-Prot
Match: Y1441_METJA (Uncharacterized protein MJ1441 OS=Methanocaldococcus jannaschii GN=MJ1441 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.421e-16
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = -1
Query:  211 GYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIE 489
            GY+G  +I KR+    GWSAT+ +V+NW+++E   TF+++EE        N  +  ++ +  LEA  RG W+T+E NIE+L++ Y E+E  IE
Sbjct: 1102 GYKGAGDIAKRIGRVYGWSATTKEVENWIFDEIFNTFVKNEENRKFFKEHNIYALEEIARRLLEAYQRGLWKTTEGNIEELKRAYLEIEGDIE 1194          
BLAST of CF834752 vs. ExPASy Swiss-Prot
Match: Y908_METJA (Uncharacterized protein MJ0908 OS=Methanocaldococcus jannaschii GN=MJ0908 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.351e-13
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = -1
Query:  211 GYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIE 489
            GY+G  +  K + +   W ATSG +D+W+YE+    ++ D++M       NP +   + +  LEA  RG W+  EE  EKLR+ Y E+E  IE
Sbjct: 1137 GYKGAADFSKYVDHMFAWDATSGIIDDWMYEKIAEKYVFDKDMEEFFKENNPYALLNITERLLEAIERGMWKADEEMKEKLRKKYLEIEGMIE 1229          
The following BLAST results are available for this feature:
BLAST of CF834752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BCHH_RHOS48.234e-2045.26Magnesium-chelatase subunit H OS=Rhodobacter sphae... [more]
BCHH_RHOCA1.075e-1944.21Magnesium-chelatase subunit H OS=Rhodobacter capsu... [more]
BCHH_CHLP82.649e-1840.00Magnesium-chelatase subunit H OS=Chlorobaculum par... [more]
Y1441_METJA9.421e-1639.78Uncharacterized protein MJ1441 OS=Methanocaldococc... [more]
Y908_METJA3.351e-1336.56Uncharacterized protein MJ0908 OS=Methanocaldococc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06B01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834752 ID=CF834752; Name=CF834752; organism=Citrus sinensis; type=EST; length=495bp
TTTTTTTTTTTTTTTTTATAAAAACAAGATTAAATTCCGTCCTCCCCCTT
ATGAACAAATGCACATCCCAAATGTTCCTAGAACTTGCATCCAATAATTT
CACAGTGAATGTGAGAAAAGAAAGGCTTATGTAAATCAGCACTGTCAATT
GATATTTGCAGACTAGGACCTATTTTAACAGTTTACTACTATAATTCACC
GGTCAATCCCTTCAATCTTGTCTTCAACTTCCGAATACAACTGCCTCAAC
TTCTCAATGTTTTCCTCCGAAGTTTCCCAGTATCCACGGCCATTGGCCTC
CAGGAATGTCTGCACCAACTTCCTAAATGAATTTGGATTGGTATTCATCA
GCCTGTTCAACATTTCCTCATCTTGGATAAAGGTAGTGTTAGCTTCTTCG
TAGACCCAGTTGTCAACTTGGCCCGAAGTTGCACTCCACCCAACAGTGTT
AGTAAGCCGCTTCTCAATTTCACGAACACCCTCATAACCACTGGA
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