CF834782

Overview
NameCF834782
Unique NameCF834782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834782_ssr222 microsatellite CF834782_ssr222:222..233. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:384..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.618e-48
Identity = 98/110 (89.09%), Postives = 102/110 (92.73%), Query Frame = 3
Query:  192 KLPKEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            KLPK+AA+GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   28 KLPKDAAAGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 2.345e-47
Identity = 100/112 (89.29%), Postives = 102/112 (91.07%), Query Frame = 3
Query:  192 KLPKE--AASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            KLPKE  AA+GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   36 KLPKEGGAAAGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 187.193 bits (474), Expect = 5.224e-47
Identity = 99/111 (89.19%), Postives = 101/111 (90.99%), Query Frame = 3
Query:  192 KLPKEA-ASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            KLPKEA A GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   40 KLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 2.593e-46
Identity = 96/110 (87.27%), Postives = 99/110 (90.00%), Query Frame = 3
Query:  192 KLPKEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            KLPK+A   D        SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   36 KLPKDAGRPDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 3.386e-46
Identity = 97/112 (86.61%), Postives = 102/112 (91.07%), Query Frame = 3
Query:  192 KLPKE--AASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            KLPKE  +A+G+        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   37 KLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 4.423e-46
Identity = 97/111 (87.39%), Postives = 100/111 (90.09%), Query Frame = 3
Query:  192 KLPKEA-ASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            KLPKEA A GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   35 KLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 4.423e-46
Identity = 97/111 (87.39%), Postives = 100/111 (90.09%), Query Frame = 3
Query:  192 KLPKEA-ASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            KLPKEA A GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   40 KLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.287e-45
Identity = 97/112 (86.61%), Postives = 100/112 (89.29%), Query Frame = 3
Query:  192 KLPKEAASG--DXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            KLPKEA +G  +        S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   40 KLPKEAVTGGVEKKKKRVKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 3.744e-45
Identity = 95/111 (85.59%), Postives = 100/111 (90.09%), Query Frame = 3
Query:  192 KLPKE-AASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            KLPKE A +GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   35 KLPKEPAGAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 4.890e-45
Identity = 95/112 (84.82%), Postives = 100/112 (89.29%), Query Frame = 3
Query:  192 KLPKE--AASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            KLPKE  +A+G+        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QE+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct:   37 KLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148          
The following BLAST results are available for this feature:
BLAST of CF834782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B3_SOLLC3.618e-4889.09Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B_GOSHI2.345e-4789.29Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B11_ARATH5.224e-4789.19Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B_CAPAN2.593e-4687.27Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B1_MEDTR3.386e-4686.61Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B7_ARATH4.423e-4687.39Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH4.423e-4687.39Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B3_ARATH1.287e-4586.61Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720... [more]
H2B10_ARATH3.744e-4585.59Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B2_MEDTR4.890e-4584.82Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834782 ID=CF834782; Name=CF834782; organism=Citrus sinensis; type=EST; length=590bp
CTTTACTCTTCCCTTTAAGAGGNAAAAGGAAAAGAAAATATCTACAAGCC
TCCCCTTTATCTCTCTCTACCAAAGCGAAATTAATGGCACCAAAGGCGGA
GAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGG
CCGAGAAGGCGCCGGGGGAGAAGAAGCCGAAGGCCGGCAACAAGCTTCCC
AAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCAT
CGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCG
ATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAAC
GATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAA
TAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTG
TACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCT
GTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGA
ATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGC
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