CF834790

Overview
NameCF834790
Unique NameCF834790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:471..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834790 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.672e-11
Identity = 29/34 (85.29%), Postives = 34/34 (100.00%), Query Frame = -2 
Query:  320 TSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 421
            TSK+RFRRELDG+HYEIQATDP+EMDLEV+R+RA
Sbjct:  109 TSKERFRRELDGVHYEIQATDPTEMDLEVLRERA 142
The following BLAST results are available for this feature:
BLAST of CF834790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ADF_VITVI5.672e-1185.29Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06B24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834790 ID=CF834790; Name=CF834790; organism=Citrus sinensis; type=EST; length=422bp
TTTTTTTTTTTTTTTTACAACTGGATGTTCTAATTAGAATACCCACTTTT
TTAAGCAAAGTCGAACAGCATAAGTATCCATGTCTATGTCCAATTTTACC
TGAGAAGCATCATGGCAATAGAGAGCCCGTGTCCTCTGGCATCGCAGTGC
CTCAGCCATGAGCTCGTTATCAGCCTTCTCAGGTGCTGATTATTTAACAA
TAGCTATATGTACTATGTGCCACACAAATACGGCAACTAATTGGAGGACA
GTTTGTGCCTTCAGACCACAAATGCAGTCTCAAGGAAACAAATTCTTTTC
CTTCAGGGCATTCTCAGCGTGCACGGTCTCTGATCACCTCAAGATCCATC
TCACTTGGGTCAGTTGCCTGAATTTCATAGTGGATGCCGTCCAGCTCCCT
CCTGAACCTGTCCTTTGATGTT
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