CF834828

Overview
NameCF834828
Unique NameCF834828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_ARATH (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=EMB1467 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 8.200e-54
Identity = 101/130 (77.69%), Postives = 116/130 (89.23%), Query Frame = -1 
Query:  228 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDERAPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK 617
            VILPASAF+EKEGTYENTEG TQQT+PAVPTVGDARDDWKI+RALSEV+G++LPY++I G+RSRI++VAPNL+H DER PA  GPSLKPE K  M  TPF + VENFYMT+SITRASK MAQCSA+LLKK
Sbjct:  616 VILPASAFTEKEGTYENTEGFTQQTVPAVPTVGDARDDWKIVRALSEVSGVKLPYNSIEGVRSRIKSVAPNLVHTDEREPAAFGPSLKPECKEAMSTTPFQTVVENFYMTNSITRASKIMAQCSAVLLKK 745
[Close]
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_SOLTU (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.002e-51
Identity = 99/129 (76.74%), Postives = 111/129 (86.05%), Query Frame = -1 
Query:  231 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDERAPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLK 617
            VILPASAF+EKEG YENTEGC Q TLPAVPTVGDARDDWKI+RALSEVAG+ LPYD++G IRSRI+TVAPNLL VDER PAT   SL+PE+  ++  TPF  AVENFYMTD+ITRASK MAQCSA+L K
Sbjct:  610 VILPASAFTEKEGIYENTEGCAQITLPAVPTVGDARDDWKIVRALSEVAGVGLPYDSLGAIRSRIKTVAPNLLEVDERQPATFSTSLRPEVSQKVSATPFTPAVENFYMTDAITRASKIMAQCSALLKK 738
[Close]
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_MOUSE (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Mus musculus GN=Ndufs1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.247e-26
Identity = 63/130 (48.46%), Postives = 88/130 (67.69%), Query Frame = -1 
Query:  249 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDE-------RAPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 617
            VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AG+ LPYDT+  +R+R+  V+PNL+  D+       +  + L   +  E+ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  582 VILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGITLPYDTLDQVRNRLEEVSPNLVRYDDIEETNYFQQASELAKLVNQEVLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710
[Close]
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_BOVIN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Bos taurus GN=NDUFS1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.247e-26
Identity = 63/130 (48.46%), Postives = 88/130 (67.69%), Query Frame = -1 
Query:  249 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDE-------RAPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 617
            VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AGM LPYDT+  +R+R+  V+PNL+  D+       +  + L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  582 VILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDVEGANYFQQASELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710
[Close]
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_PANTR (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pan troglodytes GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.241e-26
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = -1 
Query:  249 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDERAPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 617
            VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AGM LPYDT+  +R+R+  V+PNL+  D+   A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  582 VILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710
[Close]
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_HUMAN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Homo sapiens GN=NDUFS1 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 4.241e-26
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = -1 
Query:  249 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDERAPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 617
            VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AGM LPYDT+  +R+R+  V+PNL+  D+   A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  582 VILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710
[Close]
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_GORGO (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.241e-26
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = -1 
Query:  249 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDERAPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 617
            VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AGM LPYDT+  +R+R+  V+PNL+  D+   A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  582 VILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710
[Close]
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_PONPY (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo pygmaeus GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.234e-25
Identity = 63/130 (48.46%), Postives = 87/130 (66.92%), Query Frame = -1 
Query:  249 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDERAPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 617
            VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AG+ LPYDT+  +R+R+  V+PNL+  D+   A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  582 VILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGVTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710
[Close]
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_PONAB (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo abelii GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.234e-25
Identity = 63/130 (48.46%), Postives = 87/130 (66.92%), Query Frame = -1 
Query:  249 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDERAPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 617
            VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AG+ LPYDT+  +R+R+  V+PNL+  D+   A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  582 VILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGVTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710
[Close]
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_MACFA (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Macaca fascicularis GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.234e-25
Identity = 63/130 (48.46%), Postives = 87/130 (66.92%), Query Frame = -1 
Query:  249 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDERAPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 617
            VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AG+ LPYDT+  +R+R+  V+PNL+  D+   A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  582 VILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGITLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710
The following BLAST results are available for this feature:
BLAST of CF834828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
NDUS1_ARATH8.200e-5477.69NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_SOLTU1.002e-5176.74NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_MOUSE3.247e-2648.46NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_BOVIN3.247e-2648.46NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PANTR4.241e-2649.23NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_HUMAN4.241e-2649.23NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_GORGO4.241e-2649.23NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PONPY1.234e-2548.46NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PONAB1.234e-2548.46NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_MACFA1.234e-2548.46NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06D02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834828 ID=CF834828; Name=CF834828; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTTTCCCTTTAAAATCATTNGGGTTTATAAAGCAAACAGCGCTTTC
CCTTTGTAGATCATTTTACAAGGAAACAAACAATGCCTAATTTCCTTTAT
TGGAAAATACTTCCATTGTTTCACAAGATTGGCAAATAAACAGCTTCAAT
AAGATAATCTTACGGCAGCCAAAAAAAAGATAAAATTTGACACAATTATT
TGAGTAATCCGCAAAGCCAATCACTCACTTCTTCAACAGCATTGCACTGC
ATTGGGCCATGGTCTTTGATGCTCTGGTAATAGAATCAGTCATATAAAAA
TTCTCAACTGCACTACCGAAAGGAGTCAAATCCATCTCACTTTTGATCTC
GGGCTTCAAAGAAGGCCCAAGAGTAGCAGGGGCTCTCTCATCCACATGCA
AGAGATTTGGTGCCACTGTCCTGATCCGGGATCGAATGCCTCCAATTGTA
TCATAAGGTAAACGCATCCCTGCCACCTCAGAAAGTGCCCGAATTATCTT
CCAATCATCTCTGGCATCACCAACAGTTGGAACTGCAGGCAACGTCTGTT
GAGTGCAACCTTCAGTATTTTCGTAAGTCCCTTCCTTCTCGCTAAAAGCT
GATGCTGGGAGAATTAC
back to top