CF834846

Overview
NameCF834846
Unique NameCF834846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9788 contig Csv1_Contig9788:112..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.372e-71
Identity = 134/150 (89.33%), Postives = 137/150 (91.33%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH            VSKKR
Sbjct:    3 LVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.949e-57
Identity = 106/150 (70.67%), Postives = 126/150 (84.00%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGELS  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR HRGLRHYWGLRVRGQH            VSKK+
Sbjct:    3 LVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.673e-57
Identity = 101/133 (75.94%), Postives = 121/133 (90.98%), Query Frame = -2
Query:  283 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 681
            L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGELS  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR HRGLRHYWGLRVRGQH
Sbjct:    3 LIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.665e-54
Identity = 99/150 (66.00%), Postives = 123/150 (82.00%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.307e-53
Identity = 96/133 (72.18%), Postives = 116/133 (87.22%), Query Frame = -2
Query:  283 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 681
            LV  +DFQHILR+LNTNVDGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ K AGE SA EL+ +M +VANPR +KIPDWFLNRQKD+K G++SQ+ S+ LD  +RDDLERLKKIR HRGLRHYWGLRVRGQH
Sbjct:    4 LVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRGHRGLRHYWGLRVRGQH 136          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.913e-53
Identity = 98/150 (65.33%), Postives = 123/150 (82.00%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 3.804e-53
Identity = 98/150 (65.33%), Postives = 122/150 (81.33%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 3.804e-53
Identity = 98/150 (65.33%), Postives = 122/150 (81.33%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 3.804e-53
Identity = 98/150 (65.33%), Postives = 122/150 (81.33%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 3.804e-53
Identity = 98/150 (65.33%), Postives = 122/150 (81.33%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
The following BLAST results are available for this feature:
BLAST of CF834846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS18_ARATH2.372e-7189.3340S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_BRABE1.949e-5770.6740S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_AEQIR9.673e-5775.9440S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_DANRE7.665e-5466.0040S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_CHLRE1.307e-5372.1840S ribosomal protein S18 OS=Chlamydomonas reinhar... [more]
RS18_ICTPU2.913e-5365.3340S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_RAT3.804e-5365.3340S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG3.804e-5365.3340S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE3.804e-5365.3340S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_HUMAN3.804e-5365.3340S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834846 ID=CF834846; Name=CF834846; organism=Citrus sinensis; type=EST; length=682bp
AATTCATGAGATAAAAGAGGGAGATGAAATATATGTTGCCATATATCTGA
ATAAAAATATTACCATAGAGAAAATAATACCTAAAAGACAGACAGTTCAA
ATGCTTAAAACCCATCCAAAGAAAAGAAAATAAATCTAATATTGTCTGAT
GCAAATGTTCAGCAATAGCAAGTCCAAACTCTTCCTGAACATGTGTATAG
ATTGTTCAAAACATTGATAAAGGACAGCTCAACGCTTCTTGGAGACACCA
ACAGTCTTTCCACGACGGCCGGTGGTCTTGGTGTGTTGTCCACGGACACG
AAGACCCCAGTAGTGCCTGAGACCACGGTGGTTCCTGATCTTCTTCAGAC
GCTCCAAGTCATCTCTCAACTTCATGTCCAGTGCATTGGATACAACCTGA
GAATACTTTCCATCCTTGTAATCCTTCTGTCTGTTCAAGAACCAATCAGG
GATTTTAAACTGTCGGGGATTTGCAACAACGACCATGAGATTGTCAAGTT
CAGCAGCAGATAGTTCACCGGCCCTCTTGTTCATGTCAACATCAGCTTTC
TTGCAAACGATGTTAGCCAGTCGCCTTCCAATACCCTTAATTGAAGTAAG
AGCAAACATAATCTTCTGCTTCCCGTCGACGTTAGTGTTCAGCACACGCA
AAATGTGCTGAAAATCTTCGTTCGCCACCAGA
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