CF834870

Overview
NameCF834870
Unique NameCF834870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5463 contig Csv1_Contig5463:217..981. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: ABA2_ARATH (Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.554e-85
Identity = 148/211 (70.14%), Postives = 176/211 (83.41%), Query Frame = 1
Query:   22 FFCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGFTSVNHSLRVF 654
            FF H DV  E+D+ +AVD   + FGTLDI++NNAG+ GAPCPDIR   LSEFE  FD+NVKG F  MKHAAR+MIP+ KG+I+S+CSV G +GG+GPH+Y GSKHAVLGL ++VAA+LG++GIRVNCVSPYAVAT LALAHLPEEERTEDA V FRNF A NAN++G ELT +DVANAVLFLA D++RYISG NLM+DGGFT  NHS +VF
Sbjct:   74 FFIHGDVRVEDDISNAVDFAVKNFGTLDILINNAGLCGAPCPDIRNYSLSEFEMTFDVNVKGAFLSMKHAARVMIPEKKGSIVSLCSVGGVVGGVGPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLALAHLPEEERTEDAFVGFRNFAAANANLKGVELTVDDVANAVLFLASDDSRYISGDNLMIDGGFTCTNHSFKVF 284          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.842e-50
Identity = 103/217 (47.47%), Postives = 141/217 (64.98%), Query Frame = 1
Query:    7 GEPDTFFCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGT-ELTANDVANAVLFLARDEARYISGTNLMVDGGFTSVNHSLRVF 654
            G   + + HCDVT E DV +AVD    +FG LD+M NNAG+SG PC  + E    +FE+V  +N+ G F G KHAAR+M P  +G+IIS  S++ ++ G   HAYT SKHA++G  +N A +LG++GIRVNCVSP  VAT LA A +  ++   +A+      +A +AN++G   L A+D+A A LFLA D+ RY+SG NL VDGG + VN S   F
Sbjct:   62 GPDASSYVHCDVTNEGDVAAAVDHAVARFGKLDVMFNNAGVSGPPCFRMSECTKEDFERVLAVNLVGPFLGTKHAARVMAPARRGSIISTASLSSSVSGAASHAYTTSKHALVGFTENAAGELGRHGIRVNCVSPAGVATPLARAAMGMDDEAIEAI------MANSANLKGAGALKADDIAAAALFLASDDGRYVSGQNLRVDGGLSVVNSSFGFF 272          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.740e-43
Identity = 101/229 (44.10%), Postives = 131/229 (57.21%), Query Frame = 1
Query:   13 PDTFFCHCDVTKEEDVCSAVDLTDEKFG-TLDIMVNNAGISGAPCPDIREA---DLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALA--HLPEEERTEDA-----------------MVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGFTS 630
            P   F  CDV+ E+DV  AVD    + G  LD+  NNAG+ G      R     D +EF++V  +N  G   GMKHAAR M P+  G+I+S+ SVA  +GGLGPHAYT SKHA++GL KN A +L  +G+RVNCVSP+ VAT + +       ++ T DA                 +      V   A ++G  L   D+A AVLFLA DEARYISG NL+VDGG T+
Sbjct:  101 PQVSFVRCDVSVEDDVRRAVDWALSRHGGRLDVYCNNAGVLGRQTRAARSILSFDAAEFDRVLRVNALGAALGMKHAARAMAPRRAGSIVSVASVAAVLGGLGPHAYTASKHAIVGLTKNAACELRAHGVRVNCVSPFGVATPMLINAWRQGHDDATADADRDLDLDLDVTVPSDQEVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVTT 329          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: HCDR_XANP2 (2-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecD PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.162e-27
Identity = 75/201 (37.31%), Postives = 114/201 (56.72%), Query Frame = 1
Query:   37 DVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISG-APCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTEL-TANDVANAVLFLARDEARYISGTNLMVDGGFTSV 633
            DV  E DV +A+  T E+FG +D++VNNAGI+G +    +    + +F+KV  +NV+G+F G +     M+ Q  G I++I SVA  +   G  AYT SK AVL L K+VA D    GIR N V P  + T +    L + E  +  +          A +   E+ TA  VA+AV+FLA ++A Y++G  L++DG +T++
Sbjct:   60 DVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVL----------ARIPQKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAYTAI 250          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 76/204 (37.25%), Postives = 113/204 (55.39%), Query Frame = 1
Query:   25 FCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGIS-GAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGL-ALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGFTS 630
            F H D+T E    +A+    +KFG LD+++NNAGI   AP   I E +LS + KV ++N+ G+F   KHA + M+   KG II+ CSV G +      AY  SK  VL L +++A D  K+ IRVNCV P  + T L   + L   E T + +   +  V     +   E    ++AN +LFLA D + Y++G+ +  DGG+T+
Sbjct:   56 FVHTDITDEPACQNAIRSAVDKFGGLDVLINNAGIEIVAP---IHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPE----EIANVMLFLASDLSSYMTGSAITADGGYTA 252          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: LINC_PSEPA (2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase OS=Pseudomonas paucimobilis GN=linC PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.420e-25
Identity = 75/204 (36.76%), Postives = 108/204 (52.94%), Query Frame = 1
Query:   25 FCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQ-TKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGFTSV 633
            +  CD+ +EEDV + V  T   FG LD   NNA I  A  P + E  L  F +  DINV G F  MK+    MI + TKG+I++  S AG +G      Y G+KHAV+GL +  AAD GK+GIRVN + P AV T +    +  +   E  +         + +  G     ++ A A ++L  D A +++G+ L  DGGFT++
Sbjct:   56 YFRCDIAQEEDVKALVAQTLAAFGGLDGSFNNAAIPQAGLP-LAEVSLERFRQSMDINVTGTFLCMKYQILAMIERGTKGSIVNTASAAGVVGVPMHGEYVGAKHAVVGLTRVAAADYGKHGIRVNALVPGAVRTPMLQRAMDNDAGLEPYL--------NSIHPIGRFSEPHEQAQAAVWLLSDAASFVTGSCLAADGGFTAI 250          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: LVR_LEIAQ (Levodione reductase OS=Leifsonia aquatica GN=lvr PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.133e-25
Identity = 68/195 (34.87%), Postives = 106/195 (54.36%), Query Frame = 1
Query:   37 DVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGG 621
            DV+ E  V + V  T E+FG +D   NNAGI G   P       +EF+KV  IN++GVF G++   +IM  Q  G +++  SV G  G      Y  +KH V+GL +N A + G+YGIR+N ++P A+ T +    + + +  E+       F+  N + +  E  A ++A  V FL  D+A Y++ T + +DGG
Sbjct:   72 DVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPT-ESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLD-PENPRKAAEEFIQVNPSKRYGE--APEIAAVVAFLLSDDASYVNATVVPIDGG 262          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.398e-25
Identity = 76/204 (37.25%), Postives = 110/204 (53.92%), Query Frame = 1
Query:   25 FCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGIS-GAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGL-ALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGFTS 630
            F   D+T E     AV+     FG LD+++NNAGI   AP   I E +LS++ KV  +N+ G+F   KHA + M+   KG II+ CSV G +      AY  SK  VL L K++A D  K+ IRVNCV P  + T L   + L   E T + +   +  V     +   E    ++AN +LFLA D + Y++G+ +  DGG+T+
Sbjct:   56 FVQTDITDEAACQHAVESAVHTFGGLDVLINNAGIEIVAP---IHEMELSDWNKVLQVNLTGMFLMSKHALKHMLAAGKGNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSMAVDYAKHQIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPE----EIANVMLFLASDLSSYMTGSAITADGGYTA 252          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: HSD_MYCTU (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium tuberculosis GN=fabG3 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 71/199 (35.68%), Postives = 108/199 (54.27%), Query Frame = 1
Query:   25 FCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGG 621
            + H DVT+     +AVD     FG L ++VNNAGI       I +  L+E++++ D+N+ GVF G++   + M    +G+II+I S+ G  G +  H YT +K AV GL K+ A +LG  GIRVN + P  V T +    +PE+         F+  + R A          +V+N V++LA DE+ Y +G   +VDGG
Sbjct:   57 YVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGT--IEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMT-DWVPED--------IFQTALGRAAE-------PVEVSNLVVYLASDESSYSTGAEFVVDGG 237          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: HSD_MYCBO (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium bovis GN=fabG3 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 71/199 (35.68%), Postives = 108/199 (54.27%), Query Frame = 1
Query:   25 FCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGG 621
            + H DVT+     +AVD     FG L ++VNNAGI       I +  L+E++++ D+N+ GVF G++   + M    +G+II+I S+ G  G +  H YT +K AV GL K+ A +LG  GIRVN + P  V T +    +PE+         F+  + R A          +V+N V++LA DE+ Y +G   +VDGG
Sbjct:   57 YVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGT--IEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMT-DWVPED--------IFQTALGRAAE-------PVEVSNLVVYLASDESSYSTGAEFVVDGG 237          
The following BLAST results are available for this feature:
BLAST of CF834870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
ABA2_ARATH3.554e-8570.14Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN... [more]
MOMAS_ORYSJ2.842e-5047.47Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
TS2_MAIZE5.740e-4344.10Sex determination protein tasselseed-2 OS=Zea mays... [more]
HCDR_XANP21.162e-2737.312-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]
BACC2_BACSU9.837e-2737.25Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
LINC_PSEPA1.420e-2536.762,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydroge... [more]
LVR_LEIAQ4.133e-2534.87Levodione reductase OS=Leifsonia aquatica GN=lvr P... [more]
BACC_BACSU5.398e-2537.25Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
HSD_MYCTU2.051e-2435.683-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
HSD_MYCBO2.051e-2435.683-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834870 ID=CF834870; Name=CF834870; organism=Citrus sinensis; type=EST; length=765bp
CTTGGTGGTGAGCCAGACACTTTTTTTTGCCATTGTGATGTCACAAAGGA
GGAAGATGTTTGCTCTGCTGTTGACCTCACAGACGAAAAATTTGGCACAC
TTGATATCATGGTCAATAATGCTGGCATTTCAGGGGCTCCTTGTCCTGAC
ATCCGTGAGGCGGACTTATCAGAGTTTGAGAAGGTATTTGACATAAATGT
GAAGGGAGTTTTCCATGGAATGAAGCATGCAGCTCGGATCATGATCCCAC
AAACTAAAGGCACTATCATATCAATCTGCAGTGTTGCAGGTGCCATTGGT
GGTCTTGGCCCACATGCCTATACGGGGTCCAAGCATGCCGTTTTGGGACT
CAACAAGAATGTTGCCGCTGATCTTGGAAAATATGGCATCCGCGTGAACT
GTGTTTCTCCTTATGCTGTTGCAACAGGCTTGGCTTTGGCTCACTTGCCT
GAAGAGGAGAGGACAGAGGATGCCATGGTATGTTTCCGTAATTTTGTTGC
AAGAAATGCTAACATGCAGGGCACGGAGTTGACAGCTAATGATGTGGCTA
ACGCTGTTCTCTTCCTAGCAAGAGATGAAGCTAGGTACATAAGTGGAACG
AATCTGATGGTTGATGGGGGCTTCACATCTGTGAATCATTCACTTCGAGT
CTTTATATAAAATATTGGTTCCACGCCAATCAACAATTAGATGCATAAAA
GGTGATTGGAGCATTTGAGTTTCTTCGTTATTTCAGTTAGATACCTGCAA
TTGATTCCATATTTC
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