CF834875

Overview
NameCF834875
Unique NameCF834875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_XENLA (2-oxoglutarate dehydrogenase, mitochondrial OS=Xenopus laevis GN=ogdh PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.298e-40
Identity = 67/140 (47.86%), Postives = 93/140 (66.43%), Query Frame = 1
Query:  154 RIQKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RK-KHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            ++  CNW +VN +TPA++FHV+RRQI   FRKPL V +PK+LLR  E +S+   FDD+          T F+R+I +    S   EG+ RLI C+GKVYYEL + R  +    D+AI  VEQL PFP+DLV++E+++YPN
Sbjct:  819 QLYDCNWIVVNCSTPANFFHVIRRQILLPFRKPLIVFTPKSLLRHPEARSS---FDDM-------LPSTHFQRIIPEAGPASQNPEGVKRLIFCTGKVYYELTKERSGRDMEGDVAIARVEQLSPFPFDLVEKEVQKYPN 948          

HSP 2 Score: 60.077 bits (144), Expect = 4.298e-40
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPE 131
            +RQ+G+V++LPHG +G GPEHSSAR ERFL M +D+P V P+
Sbjct:  769 VRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVWPK 810          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_MACFA (2-oxoglutarate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=OGDH PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.339e-38
Identity = 59/140 (42.14%), Postives = 87/140 (62.14%), Query Frame = 1
Query:  154 RIQKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RK-KHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            ++  CNW +VN +TP ++FHVLRRQI   FRKPL + +PK+LLR  E +S+  E             GT F+R+I +    +   E + RL+ C+GKVYY+L   RK +     +AI  +EQL PFP+DL+ +E+++YPN
Sbjct:  821 QLHDCNWVVVNCSTPGNFFHVLRRQILLPFRKPLIIFTPKSLLRHPEARSSFDEM----------LPGTHFQRVIPEDGPAAQNPENVKRLLFCTGKVYYDLTRERKARDMVGQVAITRIEQLSPFPFDLLLKEVQKYPN 950          

HSP 2 Score: 63.929 bits (154), Expect = 1.339e-38
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEMDCNSSDSN 158
            +RQ+G+V++LPHG +G GPEHSSAR ERFL M +D+P V+P++   + D N
Sbjct:  770 VRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVLPDLKEANFDIN 820          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_HUMAN (2-oxoglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=OGDH PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.744e-38
Identity = 59/140 (42.14%), Postives = 87/140 (62.14%), Query Frame = 1
Query:  154 RIQKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RK-KHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            ++  CNW +VN +TP ++FHVLRRQI   FRKPL + +PK+LLR  E +S+  E             GT F+R+I +    +   E + RL+ C+GKVYY+L   RK +     +AI  +EQL PFP+DL+ +E+++YPN
Sbjct:  821 QLYDCNWVVVNCSTPGNFFHVLRRQILLPFRKPLIIFTPKSLLRHPEARSSFDEM----------LPGTHFQRVIPEDGPAAQNPENVKRLLFCTGKVYYDLTRERKARDMVGQVAITRIEQLSPFPFDLLLKEVQKYPN 950          

HSP 2 Score: 63.929 bits (154), Expect = 1.744e-38
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEMDCNSSDSN 158
            +RQ+G+V++LPHG +G GPEHSSAR ERFL M +D+P V+P++   + D N
Sbjct:  770 VRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVLPDLKEANFDIN 820          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_MOUSE (2-oxoglutarate dehydrogenase, mitochondrial OS=Mus musculus GN=Ogdh PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 5.024e-38
Identity = 58/140 (41.43%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  154 RIQKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RK-KHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            ++  CNW +VN +TP ++FHVLRRQI   FRKPL V +PK+LLR  E +++  E             GT F+R+I ++   +     + RL+ C+GKVYY+L   RK ++   ++AI  +EQL PFP+DL+ +E ++YPN
Sbjct:  821 QLYDCNWIVVNCSTPGNFFHVLRRQILLPFRKPLIVFTPKSLLRHPEARTSFDEM----------LPGTHFQRVIPENGPAAQDPHKVKRLLFCTGKVYYDLTRERKARNMEEEVAITRIEQLSPFPFDLLLKEAQKYPN 950          

HSP 2 Score: 65.0846 bits (157), Expect = 5.024e-38
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEMDCNSSDSN 158
            +RQ+G+V++LPHG +G GPEHSSAR ERFL M +D+P V+P++   + D N
Sbjct:  770 VRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVLPDLQEENFDIN 820          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_RAT (2-oxoglutarate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ogdh PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.545e-38
Identity = 59/141 (41.84%), Postives = 89/141 (63.12%), Query Frame = 1
Query:  151 TRIQKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RK-KHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            +++  CNW +VN +TP ++FHVLRRQI   FRKPL V +PK+LLR  E +++  E             GT F+R+I +    +   + + RL+ C+GKVYY+L   RK +  A ++AI  +EQL PFP+DL+ +E ++YPN
Sbjct:  820 SQLYDCNWIVVNCSTPGNFFHVLRRQILLPFRKPLIVFTPKSLLRHPEARTSFDEM----------LPGTHFQRVIPEDGPAAQNPDKVKRLLFCTGKVYYDLTRERKARDMAEEVAITRIEQLSPFPFDLLLKEAQKYPN 950          

HSP 2 Score: 62.7734 bits (151), Expect = 6.545e-38
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEMDCNSSD 152
            +RQ+G+V++LPHG +G GPEHSSAR ERFL M +D+P V+P +   + D
Sbjct:  770 VRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVLPNLQEENFD 818          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_PONAB (2-oxoglutarate dehydrogenase, mitochondrial OS=Pongo abelii GN=OGDH PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.545e-38
Identity = 58/140 (41.43%), Postives = 87/140 (62.14%), Query Frame = 1
Query:  154 RIQKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RK-KHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            ++  CNW +VN +TP ++FHVLRRQI   FRKPL + +PK+LLR  E +S+  E             GT F+R+I +    +   E + RL+ C+GKVYY+L   RK +     +AI  +EQL PFP+DL+ +E+++YP+
Sbjct:  821 QLYDCNWVVVNCSTPGNFFHVLRRQILLPFRKPLIIFTPKSLLRHPEARSSFDEM----------LPGTHFQRVIPEDGPAAQNPENVKRLLFCTGKVYYDLTRERKARDMVGQVAITRIEQLSPFPFDLLLKEVQKYPS 950          

HSP 2 Score: 63.929 bits (154), Expect = 6.545e-38
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEMDCNSSDSN 158
            +RQ+G+V++LPHG +G GPEHSSAR ERFL M +D+P V+P++   + D N
Sbjct:  770 VRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVLPDLKEANFDIN 820          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: OGDHL_XENLA (2-oxoglutarate dehydrogenase-like, mitochondrial OS=Xenopus laevis GN=ogdhl PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.111e-37
Identity = 65/134 (48.51%), Postives = 90/134 (67.16%), Query Frame = 1
Query:  166 CNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*R-KKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            CNW +VN + PASYFHVLRRQI   FRKPL + +PK+LLR  E KS+   FDD+       K GT F+R+I ++   S   + + R+I C+GKVYYEL + R +K   S +AI  +EQ+ PFP+DLV++E ++Y
Sbjct:  819 CNWIVVNCSNPASYFHVLRRQILLPFRKPLIIFTPKSLLRHPEAKSS---FDDM-------KTGTNFQRVIPENGAASHSPQEVKRVIFCTGKVYYELVKERHRKGLDSQVAITRLEQISPFPFDLVKQEAEKY 942          

HSP 2 Score: 57.7658 bits (138), Expect = 1.111e-37
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPE 131
            +R +G+V++LPHG +G GPEHSSAR ERFL MS+D+    PE
Sbjct:  765 VRHNGIVLLLPHGMEGMGPEHSSARPERFLQMSNDDSDAYPE 806          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BOVIN (2-oxoglutarate dehydrogenase, mitochondrial OS=Bos taurus GN=OGDH PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.447e-37
Identity = 58/140 (41.43%), Postives = 86/140 (61.43%), Query Frame = 1
Query:  154 RIQKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RK-KHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            ++  CNW +VN +TP ++FHVLRRQI   FRKPL + +PK+LLR  E +SN  E             GT F+R+I +    +     + RL+ C+GKVYY+L   RK +     +AI  +EQL PFP+DL+ +E+++YP+
Sbjct:  821 QLYDCNWVVVNCSTPGNFFHVLRRQILLPFRKPLIIFTPKSLLRHPEARSNFDEM----------LPGTHFQRVIPEDGPAAQNPGNVKRLLFCTGKVYYDLTRERKARDMVEQVAITRIEQLSPFPFDLLLQEVQKYPS 950          

HSP 2 Score: 63.929 bits (154), Expect = 1.447e-37
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEMDCNSSDSN 158
            +RQ+G+V++LPHG +G GPEHSSAR ERFL M +D+P V+P++   + D N
Sbjct:  770 VRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVLPDLKEANFDIN 820          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_DICDI (2-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=ogdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.652e-36
Identity = 58/138 (42.03%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  160 QKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKD-HNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            Q CN  ++N +TP +YFH LRRQ+H  FRKPL + +PK LLR ++  S   EF +            +F RL  +   D  +  E I R++ C+G+VYY L   R+ ++  D+AI  VEQL PFP+DLV  +L+ YPN
Sbjct:  813 QHCNMQVLNCSTPVNYFHALRRQVHRDFRKPLVIATPKYLLRYEKSFSTAKEFSN-----------DSFTRLYPEAFPDQINKPEKINRIVFCTGQVYYNLIASRESNNIKDVAIIRVEQLHPFPFDLVAEQLQHYPN 939          

HSP 2 Score: 63.1586 bits (152), Expect = 2.652e-36
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIP 128
            +RQSGL ++LPHGYDG GPEHSS R+ER+L + D +P  IP
Sbjct:  762 MRQSGLTMLLPHGYDGAGPEHSSCRIERYLQLCDSDPNKIP 802          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: OGDHL_HUMAN (2-oxoglutarate dehydrogenase-like, mitochondrial OS=Homo sapiens GN=OGDHL PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 2.652e-36
Identity = 59/140 (42.14%), Postives = 89/140 (63.57%), Query Frame = 1
Query:  151 TRIQKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASD-IAICMVEQLCPFPYDLVQRELKRYP 567
            +++  CNW +VN +TPA+YFHVLRRQI   FRKPL + +PK+LLR  E KS+  +             GT+F+R+I +    +   E + RLI C+GKVYY+L + R      + +AI  +EQ+ PFP+DL+++E ++YP
Sbjct:  806 SQLYDCNWIVVNCSTPANYFHVLRRQILLPFRKPLIIFTPKSLLRHPEAKSSFDQM----------VSGTSFQRVIPEDGAAARAPEQVQRLIFCTGKVYYDLVKERSSQDLEEKVAITRLEQISPFPFDLIKQEAEKYP 935          

HSP 2 Score: 55.8398 bits (133), Expect = 2.652e-36
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIP 128
            +R +G+V++LPHG +G GPEHSSAR ERFL MS+D+    P
Sbjct:  757 VRHNGIVLLLPHGMEGMGPEHSSARPERFLQMSNDDSDAYP 797          
The following BLAST results are available for this feature:
BLAST of CF834875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
ODO1_XENLA4.298e-4047.862-oxoglutarate dehydrogenase, mitochondrial OS=Xen... [more]
ODO1_MACFA1.339e-3842.142-oxoglutarate dehydrogenase, mitochondrial OS=Mac... [more]
ODO1_HUMAN1.744e-3842.142-oxoglutarate dehydrogenase, mitochondrial OS=Hom... [more]
ODO1_MOUSE5.024e-3841.432-oxoglutarate dehydrogenase, mitochondrial OS=Mus... [more]
ODO1_RAT6.545e-3841.842-oxoglutarate dehydrogenase, mitochondrial OS=Rat... [more]
ODO1_PONAB6.545e-3841.432-oxoglutarate dehydrogenase, mitochondrial OS=Pon... [more]
OGDHL_XENLA1.111e-3748.512-oxoglutarate dehydrogenase-like, mitochondrial O... [more]
ODO1_BOVIN1.447e-3741.432-oxoglutarate dehydrogenase, mitochondrial OS=Bos... [more]
ODO1_DICDI2.652e-3642.032-oxoglutarate dehydrogenase, mitochondrial OS=Dic... [more]
OGDHL_HUMAN2.652e-3642.142-oxoglutarate dehydrogenase-like, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834875 ID=CF834875; Name=CF834875; organism=Citrus sinensis; type=EST; length=571bp
ACGGGTTGCGCCAATCTGGGCTTGTTGTGATGCTCCCTCATGGTTATGAT
GGTCAAGGCCCTGAACATTCAAGTGCACGATTGGAGCGGTTCCTTCATAT
GAGTGATGACAATCCATATGTTATACCTGAGATGGATTGCAACTCTTCAG
ACTCGAATCCAAAAATGCAACTGGCATATTGTGAATGTTACAACTCCTGC
TAGCTACTTCCATGTTTTGAGGCGTCAGATCCACGGATAATTCCGTAAGC
CTCTCTCTGTGATGTCACCCAAAAATCTGCTTCGTCGCAAGGAATGCAAA
TCAAATCTTTCTGAGTTTGATGATGTACAAGGTCACCCAGGTTTTGACAA
ACAAGGGACTACATTTAAACGGCTTATAAAGGATCACAATGATCACTCTG
ATCTTGAGGAGGGCATCATACGTCTGATTCTTTGTTCTGGAAAAGTCTAT
TATGAGCTTTATGAATAGCGAAAGAAGCACAGTGCAAGTGACATTGCTAT
TTGTATGGTGGAACAGCTTTGTCCTTTCCCATATGACCTTGTCCAGCGGG
AGCTTAAACGATATCCAAATG
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