CF834880

Overview
NameCF834880
Unique NameCF834880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length376
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1992 contig Csv1_Contig1992:1302..1677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: KSG5_ARATH (Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana GN=ASK5 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.631e-23
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = -2
Query:  196 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFL 369
            EA +HPFF ELRDPN RLPNGR  PPLFNFKPQELKGAS ELLSKLIP+HARKQC FL
Sbjct:  351 EAIVHPFFDELRDPNTRLPNGRALPPLFNFKPQELKGASLELLSKLIPDHARKQCSFL 408          
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: KSG1_ARATH (Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.206e-21
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = -2
Query:  193 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFLG 369
            +  +HPFF ELRDPNARLPNGR  PPLFNFKP ELKG   E+++KL+PEHARKQCP+LG
Sbjct:  346 DTLVHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGVPLEMVAKLVPEHARKQCPWLG 404          
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: KSG4_ARATH (Shaggy-related protein kinase delta OS=Arabidopsis thaliana GN=ASK4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.059e-20
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = -2
Query:  196 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFL 369
            EACIHPFF ELRDPNARLPNGRP PPLFNFKPQEL G   E + +L+PEHARKQ  F+
Sbjct:  359 EACIHPFFDELRDPNARLPNGRPLPPLFNFKPQELSGIPPETVDRLVPEHARKQNHFM 416          
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: KSG3_ARATH (Shaggy-related protein kinase gamma OS=Arabidopsis thaliana GN=ASK3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.358e-20
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = -2
Query:  196 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFL 369
            ++ +HPFF ELRDPNARLPNGR  PPLFNFKP ELKG   E+++KL+PEHARKQCP+L
Sbjct:  350 DSLVHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGVPVEMVAKLVPEHARKQCPWL 407          
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: MSK1_MEDSA (Glycogen synthase kinase-3 homolog MsK-1 OS=Medicago sativa GN=MSK-1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.023e-20
Identity = 44/55 (80.00%), Postives = 45/55 (81.82%), Query Frame = -2
Query:  193 HPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFLG 357
            HPFF ELRDPNARLP GR  PPLFNFKP ELKG   E L KL+PEHARKQCPFLG
Sbjct:  356 HPFFDELRDPNARLPTGRFLPPLFNFKPHELKGVPVETLMKLVPEHARKQCPFLG 410          
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: KSG10_ARATH (Shaggy-related protein kinase kappa OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.862e-20
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = -2
Query:  196 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFL 369
            EACIHP F ELRDPN RLPNGRP PPLFNFKPQEL G   E++++L+PEHARKQ  F+
Sbjct:  360 EACIHPLFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPEIVNRLVPEHARKQNLFM 417          
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: MSK1_TOBAC (Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.809e-19
Identity = 44/59 (74.58%), Postives = 45/59 (76.27%), Query Frame = -2
Query:  193 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFLG 369
            EA  H FF ELRDPN RLPNGR  PPLFNFK  ELKG S E L KL+PEHARKQCP LG
Sbjct:  350 EAVTHAFFDELRDPNTRLPNGRVLPPLFNFKAHELKGVSAENLLKLVPEHARKQCPSLG 408          
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: KSG6_ARATH (Shaggy-related protein kinase zeta OS=Arabidopsis thaliana GN=ASK6 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.690e-18
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = -2
Query:  208 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQ 369
            EAC HPFF ELR+PNARLPNGRP PPLFNFK QEL GAS EL+++LIPEH R+Q
Sbjct:  349 EACAHPFFNELREPNARLPNGRPLPPLFNFK-QELSGASPELINRLIPEHVRRQ 401          
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: KSG9_ARATH (Shaggy-related protein kinase iota OS=Arabidopsis thaliana GN=ASK9 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = -2
Query:  208 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQ 369
            EAC HPFF ELR+PNARLPNGRP PPLFNFK QEL GAS EL+++LIPEH R+Q
Sbjct:  347 EACAHPFFNELREPNARLPNGRPLPPLFNFK-QELGGASMELINRLIPEHVRRQ 399          
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: MSK2_MEDSA (Glycogen synthase kinase-3 homolog MsK-2 OS=Medicago sativa GN=MSK-2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.917e-18
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = -2
Query:  205 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQC 369
            EA +HPFF ELRDPN RLPNGR  PPLFNFK  ELKG   E+L KL+P HARKQC
Sbjct:  351 EALVHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLVPSHARKQC 405          
The following BLAST results are available for this feature:
BLAST of CF834880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
KSG5_ARATH6.631e-2384.48Shaggy-related protein kinase epsilon OS=Arabidops... [more]
KSG1_ARATH6.206e-2172.88Shaggy-related protein kinase alpha OS=Arabidopsis... [more]
KSG4_ARATH1.059e-2075.86Shaggy-related protein kinase delta OS=Arabidopsis... [more]
KSG3_ARATH2.358e-2072.41Shaggy-related protein kinase gamma OS=Arabidopsis... [more]
MSK1_MEDSA4.023e-2080.00Glycogen synthase kinase-3 homolog MsK-1 OS=Medica... [more]
KSG10_ARATH6.862e-2072.41Shaggy-related protein kinase kappa OS=Arabidopsis... [more]
MSK1_TOBAC5.809e-1974.58Shaggy-related protein kinase NtK-1 OS=Nicotiana t... [more]
KSG6_ARATH1.690e-1877.78Shaggy-related protein kinase zeta OS=Arabidopsis ... [more]
KSG9_ARATH2.883e-1877.78Shaggy-related protein kinase iota OS=Arabidopsis ... [more]
MSK2_MEDSA4.917e-1872.73Glycogen synthase kinase-3 homolog MsK-2 OS=Medica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834880 ID=CF834880; Name=CF834880; organism=Citrus sinensis; type=EST; length=376bp
AAATATTCACTTCCCTTATGAGTGCATAATCTAACTGAACTGCCACTCTC
ACTCCTGCATGCTTACTTCAGTCGGAACAGTTCTTGGTGAGAATAAACAA
CGGATGTATCCCTAATCCGTCAGATAGCATAAAGACAAATTTAGTACAAT
AAATTTACTCTAATATCCAACAACACATGTTGAAATCTAGAAACCAAGGA
AGGGACATTGCTTTCGTGCATGTTCTGGAATCAGTTTTGATAAGAGCTCC
TTGCTTGCCCCTTTCAGCTCTTGAGGTTTAAAGTTGAAAAGGGGAGGAAA
GGGACGCCCATTAGGGAGACGTGCGTTAGGATCACGAAGTTCATAAAAAA
ATGGATGAATACAGGCTTCTCCACCA
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