CF834881

Overview
NameCF834881
Unique NameCF834881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1992 contig Csv1_Contig1992:1301..1711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: KSG5_ARATH (Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana GN=ASK5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.026e-23
Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFL 182
            A+E  +HPFF ELRDPN RLPNGR  PPLFNFKPQELKGAS ELLSKLIP+HARKQC FL
Sbjct:  349 AMEAIVHPFFDELRDPNTRLPNGRALPPLFNFKPQELKGASLELLSKLIPDHARKQCSFL 408          
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: KSG1_ARATH (Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 9.479e-22
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFLG 185
            AL+  +HPFF ELRDPNARLPNGR  PPLFNFKP ELKG   E+++KL+PEHARKQCP+LG
Sbjct:  344 ALDTLVHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGVPLEMVAKLVPEHARKQCPWLG 404          
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: KSG3_ARATH (Shaggy-related protein kinase gamma OS=Arabidopsis thaliana GN=ASK3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.704e-21
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFL 182
            AL+  +HPFF ELRDPNARLPNGR  PPLFNFKP ELKG   E+++KL+PEHARKQCP+L
Sbjct:  348 ALDSLVHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGVPVEMVAKLVPEHARKQCPWL 407          
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: MSK1_MEDSA (Glycogen synthase kinase-3 homolog MsK-1 OS=Medicago sativa GN=MSK-1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.048e-20
Identity = 46/61 (75.41%), Postives = 48/61 (78.69%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFLG 185
            AL+   HPFF ELRDPNARLP GR  PPLFNFKP ELKG   E L KL+PEHARKQCPFLG
Sbjct:  350 ALDCLTHPFFDELRDPNARLPTGRFLPPLFNFKPHELKGVPVETLMKLVPEHARKQCPFLG 410          
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: KSG4_ARATH (Shaggy-related protein kinase delta OS=Arabidopsis thaliana GN=ASK4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.048e-20
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFL 182
            A+E CIHPFF ELRDPNARLPNGRP PPLFNFKPQEL G   E + +L+PEHARKQ  F+
Sbjct:  357 AVEACIHPFFDELRDPNARLPNGRPLPPLFNFKPQELSGIPPETVDRLVPEHARKQNHFM 416          
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: KSG10_ARATH (Shaggy-related protein kinase kappa OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.049e-20
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFL 182
            ALE CIHP F ELRDPN RLPNGRP PPLFNFKPQEL G   E++++L+PEHARKQ  F+
Sbjct:  358 ALEACIHPLFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPEIVNRLVPEHARKQNLFM 417          
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: MSK1_TOBAC (Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.581e-19
Identity = 45/61 (73.77%), Postives = 46/61 (75.41%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFLG 185
            ALE   H FF ELRDPN RLPNGR  PPLFNFK  ELKG S E L KL+PEHARKQCP LG
Sbjct:  348 ALEAVTHAFFDELRDPNTRLPNGRVLPPLFNFKAHELKGVSAENLLKLVPEHARKQCPSLG 408          
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: KSG6_ARATH (Shaggy-related protein kinase zeta OS=Arabidopsis thaliana GN=ASK6 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.510e-19
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQ 170
            ALE C HPFF ELR+PNARLPNGRP PPLFNFK QEL GAS EL+++LIPEH R+Q
Sbjct:  347 ALEACAHPFFNELREPNARLPNGRPLPPLFNFK-QELSGASPELINRLIPEHVRRQ 401          
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: KSG9_ARATH (Shaggy-related protein kinase iota OS=Arabidopsis thaliana GN=ASK9 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.281e-18
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQ 170
            ALE C HPFF ELR+PNARLPNGRP PPLFNFK QEL GAS EL+++LIPEH R+Q
Sbjct:  345 ALEACAHPFFNELREPNARLPNGRPLPPLFNFK-QELGGASMELINRLIPEHVRRQ 399          
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: MSK2_MEDSA (Glycogen synthase kinase-3 homolog MsK-2 OS=Medicago sativa GN=MSK-2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.185e-18
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQC 173
            ALE  +HPFF ELRDPN RLPNGR  PPLFNFK  ELKG   E+L KL+P HARKQC
Sbjct:  349 ALEALVHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLVPSHARKQC 405          
The following BLAST results are available for this feature:
BLAST of CF834881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
KSG5_ARATH5.026e-2381.67Shaggy-related protein kinase epsilon OS=Arabidops... [more]
KSG1_ARATH9.479e-2273.77Shaggy-related protein kinase alpha OS=Arabidopsis... [more]
KSG3_ARATH4.704e-2173.33Shaggy-related protein kinase gamma OS=Arabidopsis... [more]
MSK1_MEDSA1.048e-2075.41Glycogen synthase kinase-3 homolog MsK-1 OS=Medica... [more]
KSG4_ARATH1.048e-2073.33Shaggy-related protein kinase delta OS=Arabidopsis... [more]
KSG10_ARATH3.049e-2071.67Shaggy-related protein kinase kappa OS=Arabidopsis... [more]
MSK1_TOBAC2.581e-1973.77Shaggy-related protein kinase NtK-1 OS=Nicotiana t... [more]
KSG6_ARATH7.510e-1976.79Shaggy-related protein kinase zeta OS=Arabidopsis ... [more]
KSG9_ARATH1.281e-1876.79Shaggy-related protein kinase iota OS=Arabidopsis ... [more]
MSK2_MEDSA2.185e-1871.93Glycogen synthase kinase-3 homolog MsK-2 OS=Medica... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06E13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834881 ID=CF834881; Name=CF834881; organism=Citrus sinensis; type=EST; length=411bp
CTGCTTTAGAACCCTGTATTCATCCATTTTTTTATGAACTTCGTGATCCT
AACGCACGTCTCCCTAATGGGCGTCCCTTTCCTCCCCTTTTCAACTTTAA
ACCTCAAGAGCTGAAAGGGGCAAGCAAGGAGCTCTTATCAAAACTGATTC
CAGAACATGCACGAAAGCAATGTCCCTTCCTTGGTTTCTAGATTTCAACA
TGTGTTGTTGGATATTAGAGTAAATTTATTGTACTAAATTTGTCTTTATG
CTATCTGACGGATTAGGGATACATCCGTTGTTTATTCTCACCAAGAACTG
TTCCGACTGAAGTAAGCATGCAAAAGTGAGAGTGGCAGTTCAGTTAGATT
ATGCACTGATGAACAAAGTGAATATTTATGTGATGCATTTTGTTTAAAAA
AAAAAAAAAAA
back to top