CF834882

Overview
NameCF834882
Unique NameCF834882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1992 contig Csv1_Contig1992:1302..1708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: KSG5_ARATH (Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana GN=ASK5 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.328e-23
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = -2
Query:  227 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFL 406
            A+EA +HPFF ELRDPN RLPNGR  PPLFNFKPQELKGAS ELLSKLIP+HARKQC FL
Sbjct:  349 AMEAIVHPFFDELRDPNTRLPNGRALPPLFNFKPQELKGASLELLSKLIPDHARKQCSFL 408          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: KSG1_ARATH (Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1 PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 7.286e-22
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = -2
Query:  224 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFLG 406
            AL+  +HPFF ELRDPNARLPNGR  PPLFNFKP ELKG   E+++KL+PEHARKQCP+LG
Sbjct:  344 ALDTLVHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGVPLEMVAKLVPEHARKQCPWLG 404          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: KSG4_ARATH (Shaggy-related protein kinase delta OS=Arabidopsis thaliana GN=ASK4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.769e-21
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = -2
Query:  227 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFL 406
            A+EACIHPFF ELRDPNARLPNGRP PPLFNFKPQEL G   E + +L+PEHARKQ  F+
Sbjct:  357 AVEACIHPFFDELRDPNARLPNGRPLPPLFNFKPQELSGIPPETVDRLVPEHARKQNHFM 416          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: KSG3_ARATH (Shaggy-related protein kinase gamma OS=Arabidopsis thaliana GN=ASK3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.769e-21
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = -2
Query:  227 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFL 406
            AL++ +HPFF ELRDPNARLPNGR  PPLFNFKP ELKG   E+++KL+PEHARKQCP+L
Sbjct:  348 ALDSLVHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGVPVEMVAKLVPEHARKQCPWL 407          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: MSK1_MEDSA (Glycogen synthase kinase-3 homolog MsK-1 OS=Medicago sativa GN=MSK-1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.723e-21
Identity = 46/61 (75.41%), Postives = 48/61 (78.69%), Query Frame = -2
Query:  224 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFLG 406
            AL+   HPFF ELRDPNARLP GR  PPLFNFKP ELKG   E L KL+PEHARKQCPFLG
Sbjct:  350 ALDCLTHPFFDELRDPNARLPTGRFLPPLFNFKPHELKGVPVETLMKLVPEHARKQCPFLG 410          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: KSG10_ARATH (Shaggy-related protein kinase kappa OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.056e-21
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = -2
Query:  227 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFL 406
            ALEACIHP F ELRDPN RLPNGRP PPLFNFKPQEL G   E++++L+PEHARKQ  F+
Sbjct:  358 ALEACIHPLFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPEIVNRLVPEHARKQNLFM 417          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: MSK1_TOBAC (Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.820e-20
Identity = 46/61 (75.41%), Postives = 47/61 (77.05%), Query Frame = -2
Query:  224 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFLG 406
            ALEA  H FF ELRDPN RLPNGR  PPLFNFK  ELKG S E L KL+PEHARKQCP LG
Sbjct:  348 ALEAVTHAFFDELRDPNTRLPNGRVLPPLFNFKAHELKGVSAENLLKLVPEHARKQCPSLG 408          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: KSG6_ARATH (Shaggy-related protein kinase zeta OS=Arabidopsis thaliana GN=ASK6 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = -2
Query:  239 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQ 406
            ALEAC HPFF ELR+PNARLPNGRP PPLFNFK QEL GAS EL+++LIPEH R+Q
Sbjct:  347 ALEACAHPFFNELREPNARLPNGRPLPPLFNFK-QELSGASPELINRLIPEHVRRQ 401          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: KSG9_ARATH (Shaggy-related protein kinase iota OS=Arabidopsis thaliana GN=ASK9 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.385e-19
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = -2
Query:  239 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQ 406
            ALEAC HPFF ELR+PNARLPNGRP PPLFNFK QEL GAS EL+++LIPEH R+Q
Sbjct:  345 ALEACAHPFFNELREPNARLPNGRPLPPLFNFK-QELGGASMELINRLIPEHVRRQ 399          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: MSK2_MEDSA (Glycogen synthase kinase-3 homolog MsK-2 OS=Medicago sativa GN=MSK-2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.773e-19
Identity = 42/57 (73.68%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  236 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQC 406
            ALEA +HPFF ELRDPN RLPNGR  PPLFNFK  ELKG   E+L KL+P HARKQC
Sbjct:  349 ALEALVHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLVPSHARKQC 405          
The following BLAST results are available for this feature:
BLAST of CF834882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
KSG5_ARATH1.328e-2383.33Shaggy-related protein kinase epsilon OS=Arabidops... [more]
KSG1_ARATH7.286e-2273.77Shaggy-related protein kinase alpha OS=Arabidopsis... [more]
KSG4_ARATH2.769e-2175.00Shaggy-related protein kinase delta OS=Arabidopsis... [more]
KSG3_ARATH2.769e-2173.33Shaggy-related protein kinase gamma OS=Arabidopsis... [more]
MSK1_MEDSA4.723e-2175.41Glycogen synthase kinase-3 homolog MsK-1 OS=Medica... [more]
KSG10_ARATH8.056e-2173.33Shaggy-related protein kinase kappa OS=Arabidopsis... [more]
MSK1_TOBAC6.820e-2075.41Shaggy-related protein kinase NtK-1 OS=Nicotiana t... [more]
KSG6_ARATH1.984e-1978.57Shaggy-related protein kinase zeta OS=Arabidopsis ... [more]
KSG9_ARATH3.385e-1978.57Shaggy-related protein kinase iota OS=Arabidopsis ... [more]
MSK2_MEDSA5.773e-1973.68Glycogen synthase kinase-3 homolog MsK-2 OS=Medica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834882 ID=CF834882; Name=CF834882; organism=Citrus sinensis; type=EST; length=407bp
TTTTTTTTTTTTTTTTAACAAATGCATACATAAATATTAACTTCCCTTAA
AAGCGCATAATGTAANTGAACTGCCACTCTCACTCTTTCATGGTTACTTC
AGTCGGAACAGTTCTTGGTGAGAATAAACAACGGATGTATCCCTAATCCG
TCAGATAGCATAAAGACAAATTTAGTACAATAAATTTACTCTAATATCCA
ACAACACATGTTGAAATCTAGAAACCAAGGAAGGGACATTGCTTTCGTGC
ATGTTCTGGAATCAGTTTTGATAAGAGCTCCTTGCTTGCCCCTTTCAGCT
CTTGAGGTTTAAAGTTGAAAAGGGGAGGAAAGGGACGCCCATTAGGGAGA
CGTGCGTTAGGATCACGAAGTTCATAAAAAAATGGATGAATACAGGCTTC
TAAAGCA
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