CF834887
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834887 vs. ExPASy Swiss-Prot
Match: SF3A1_ARATH (Probable splicing factor 3 subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2) HSP 1 Score: 166.007 bits (419), Expect = 1.926e-40 Identity = 93/173 (53.76%), Postives = 108/173 (62.43%), Query Frame = 3 Query: 21 GVHDPPPPGSHFTH-MQVPQHFAHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRQKLDDSMLIPEDQFLAQHQGPVLVTVAVPNVDEGNLKGQLLEITMQSLSETDGSLKEKISGEIQLPANKHKLSGKAGFQKDNMSLAYYNVTTGETLTLSLRERGGRKR 536 G+H PPPPGS F H MQ+P+ + L KRQK D+S L+PEDQFLAQH GP + V+ PN ++G Q +EIT+QSLSE GSLKEKI+GEIQ+PANK KLSGKAGF KDNMSLA+YNV GE LTLSLRERGGRKR Sbjct: 620 GMHVPPPPGSQFAHHMQIPRPYGQLPPSAMGMMQPPPMPGMAPPPPPEEAPPPLPEEPEA---KRQKFDESALVPEDQFLAQHPGPATIRVSKPNENDG----QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERGGRKR 785
BLAST of CF834887 vs. ExPASy Swiss-Prot
Match: SF3A1_HUMAN (Splicing factor 3 subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16 Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 3 Query: 207 KRQKLDDSMLIPEDQFLAQHQGPVLVTVAVPNVD---EGNLKGQLLEITMQSLSETDGSLKEKISGEIQLPANKHKLSGKAGFQKDNMSLAYYNVTTGETLTLSLRERGGRKR 536 K+ K +DS L+PE++FL +++GPV + V VPN+ E L GQ+L T+ L++ +K KI +PA K KL + F KD+ SLAYYN+ G + L+L+ERGGRK+ Sbjct: 683 KKLKTEDS-LMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793
BLAST of CF834887 vs. ExPASy Swiss-Prot
Match: SF3A1_BOVIN (Splicing factor 3 subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16 Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 3 Query: 207 KRQKLDDSMLIPEDQFLAQHQGPVLVTVAVPNVD---EGNLKGQLLEITMQSLSETDGSLKEKISGEIQLPANKHKLSGKAGFQKDNMSLAYYNVTTGETLTLSLRERGGRKR 536 K+ K +DS L+PE++FL +++GPV + V VPN+ E L GQ+L T+ L++ +K KI +PA K KL + F KD+ SLAYYN+ G + L+L+ERGGRK+ Sbjct: 683 KKLKTEDS-LMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793
BLAST of CF834887 vs. ExPASy Swiss-Prot
Match: SF3A1_MOUSE (Splicing factor 3 subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15 Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 3 Query: 207 KRQKLDDSMLIPEDQFLAQHQGPVLVTVAVPNVD---EGNLKGQLLEITMQSLSETDGSLKEKISGEIQLPANKHKLSGKAGFQKDNMSLAYYNVTTGETLTLSLRERGGRKR 536 K+ K +DS L+PE++FL +++GPV + V VPN+ E L GQ L T+ L++ +K KI +PA K KL + F KD+ SLAYYN+ +G + L+L+ERGGRK+ Sbjct: 681 KKLKTEDS-LMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERGGRKK 791 The following BLAST results are available for this feature:
BLAST of CF834887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF834887 ID=CF834887; Name=CF834887; organism=Citrus sinensis; type=EST; length=743bpback to top |