CF834887

Overview
NameCF834887
Unique NameCF834887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834887 vs. ExPASy Swiss-Prot
Match: SF3A1_ARATH (Probable splicing factor 3 subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.926e-40
Identity = 93/173 (53.76%), Postives = 108/173 (62.43%), Query Frame = 3
Query:   21 GVHDPPPPGSHFTH-MQVPQHFAHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRQKLDDSMLIPEDQFLAQHQGPVLVTVAVPNVDEGNLKGQLLEITMQSLSETDGSLKEKISGEIQLPANKHKLSGKAGFQKDNMSLAYYNVTTGETLTLSLRERGGRKR 536
            G+H PPPPGS F H MQ+P+ +  L                                      KRQK D+S L+PEDQFLAQH GP  + V+ PN ++G    Q +EIT+QSLSE  GSLKEKI+GEIQ+PANK KLSGKAGF KDNMSLA+YNV  GE LTLSLRERGGRKR
Sbjct:  620 GMHVPPPPGSQFAHHMQIPRPYGQLPPSAMGMMQPPPMPGMAPPPPPEEAPPPLPEEPEA---KRQKFDESALVPEDQFLAQHPGPATIRVSKPNENDG----QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERGGRKR 785          
BLAST of CF834887 vs. ExPASy Swiss-Prot
Match: SF3A1_HUMAN (Splicing factor 3 subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  207 KRQKLDDSMLIPEDQFLAQHQGPVLVTVAVPNVD---EGNLKGQLLEITMQSLSETDGSLKEKISGEIQLPANKHKLSGKAGFQKDNMSLAYYNVTTGETLTLSLRERGGRKR 536
            K+ K +DS L+PE++FL +++GPV + V VPN+    E  L GQ+L  T+  L++    +K KI     +PA K KL  +  F KD+ SLAYYN+  G  + L+L+ERGGRK+
Sbjct:  683 KKLKTEDS-LMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793          
BLAST of CF834887 vs. ExPASy Swiss-Prot
Match: SF3A1_BOVIN (Splicing factor 3 subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  207 KRQKLDDSMLIPEDQFLAQHQGPVLVTVAVPNVD---EGNLKGQLLEITMQSLSETDGSLKEKISGEIQLPANKHKLSGKAGFQKDNMSLAYYNVTTGETLTLSLRERGGRKR 536
            K+ K +DS L+PE++FL +++GPV + V VPN+    E  L GQ+L  T+  L++    +K KI     +PA K KL  +  F KD+ SLAYYN+  G  + L+L+ERGGRK+
Sbjct:  683 KKLKTEDS-LMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793          
BLAST of CF834887 vs. ExPASy Swiss-Prot
Match: SF3A1_MOUSE (Splicing factor 3 subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  207 KRQKLDDSMLIPEDQFLAQHQGPVLVTVAVPNVD---EGNLKGQLLEITMQSLSETDGSLKEKISGEIQLPANKHKLSGKAGFQKDNMSLAYYNVTTGETLTLSLRERGGRKR 536
            K+ K +DS L+PE++FL +++GPV + V VPN+    E  L GQ L  T+  L++    +K KI     +PA K KL  +  F KD+ SLAYYN+ +G  + L+L+ERGGRK+
Sbjct:  681 KKLKTEDS-LMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERGGRKK 791          
The following BLAST results are available for this feature:
BLAST of CF834887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SF3A1_ARATH1.926e-4053.76Probable splicing factor 3 subunit 1 OS=Arabidopsi... [more]
SF3A1_HUMAN9.625e-1643.36Splicing factor 3 subunit 1 OS=Homo sapiens GN=SF3... [more]
SF3A1_BOVIN9.625e-1643.36Splicing factor 3 subunit 1 OS=Bos taurus GN=SF3A1... [more]
SF3A1_MOUSE2.800e-1543.36Splicing factor 3 subunit 1 OS=Mus musculus GN=Sf3... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06E17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834887 ID=CF834887; Name=CF834887; organism=Citrus sinensis; type=EST; length=743bp
CGATTTCCATGCATTTATCTGGGGTGCATGACCCACCGCCTCCTGGATCT
CACTTTACTCATATGCAAGTTCCGCAACATTTTGCCCATCTCCCGGGCCC
TGCACCACCTCCTGTGACTATGATGCAGCCACCACCTTTGCCTCATGGGA
TGCCTCCTCCACCTCGAACTGAAGCTCCGCCGCCACTTCCAGAAGAGCCG
GAGCCAAAGAGGCAGAAGCTTGATGATTCTATGCTTATTCCTGAAGATCA
ATTTCTGGCACAGCATCAGGGACCTGTTCTCGTCACCGTGGCTGTTCCCA
ATGTTGATGAAGGAAATCTGAAAGGGCAACTTCTGGAGATTACAATGCAG
TCCTTATCTGAAACTGATGGCAGTTTGAAAGAGAAAATTTCTGGGGAGAT
TCAACTTCCTGCAAACAAACATAAATTGAGTGGAAAAGCTGGTTTTCAGA
AGGATAATATGTCACTTGCATATTATAATGTCACAACAGGGGAAACACTA
ACTCTTTCTTTGAGAGAGCGGGGCGGTAGAAAGAGATAATGGGCTTCTTA
ATGGGGCTATACTTGAGGATTTTGTTGGAACTGCCTTCTTACCCTAAGAC
TTTTCCATTTTTCCATGTATAACAACAGTTTTATAACTCAACCTGCATTG
ATGCTATATGTGGGATGTTGTATTGCTTATTTTTCTTTGGGATAAGTATT
TGAGACCCTATTGTTGTTGTCATGGAACTGATGGTAAATTAAT
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