CF834888
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 3.003e-49 Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = -2 Query: 124 MVKGRQGERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 459 MVKGRQGERV+LYV GTILGYKRSKSNQYPNTSL+QI+GVN +EE+ WY GKR+AYI KAKTKKNG+HYRCIWGKV R H NSG+VRAKF SNL PKSMG RVRVFMYP+NI Sbjct: 1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 3.003e-49 Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = -2 Query: 124 MVKGRQGERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 459 MVKGRQGERV+LYV GTILGYKRSKSNQYPNTSL+Q++GVN EE++WY GKR+AYI KAKTKKNG+HYRCIWGKV R H NSG+VRAKF SNL PKSMG RVRVFMYP+NI Sbjct: 1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 5.664e-48 Identity = 90/111 (81.08%), Postives = 100/111 (90.09%), Query Frame = -2 Query: 124 VKGRQGERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 456 +KGRQGERV+LYV GT+LGYKRSKSNQYPNTSLIQI+GVN +EE+ WY GKRLAYI KAKTKKNG+HYRCIWGKV R H NSG+VR+KF SNL PKSMG RVRVFMYP+NI Sbjct: 1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2) HSP 1 Score: 189.504 bits (480), Expect = 7.398e-48 Identity = 89/111 (80.18%), Postives = 100/111 (90.09%), Query Frame = -2 Query: 124 VKGRQGERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 456 +KGRQGERV+LYV GT+LGYKRSKSNQYPNTSL+QI+GVN +EE+ WY GKRLAYI KAKTKKNG+HYRCIWGKV R H NSG+VR+KF SNL PKSMG RVRVFMYP+NI Sbjct: 1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL33B_YEAST (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae GN=RPL33B PE=1 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 4.828e-23 Identity = 52/105 (49.52%), Postives = 72/105 (68.57%), Query Frame = -2 Query: 124 ERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 438 E +LYV G L Y+RSK PN SLI+I+GV +E +Y GKR+AY+ +A + G+ R +WGKV R+H NSG+VRA F++NL K+ G VR+F+YP+NI Sbjct: 3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_DICDI (60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 6.306e-23 Identity = 49/103 (47.57%), Postives = 76/103 (73.79%), Query Frame = -2 Query: 124 KLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICK-AKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 429 K+Y G +LGY+RS++ QYPN SLI+I+GV +E+ +Y GK++ + K +K+ KN T ++ WGK+ ++H +SG+V+A+F NL PK+MG VRV +YP+NI Sbjct: 3 KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSKSAKNPTGHKISWGKICKTHGSSGVVQARFARNLPPKAMGAPVRVMLYPSNI 105
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL33A_YEAST (60S ribosomal protein L33-A OS=Saccharomyces cerevisiae GN=RPL33A PE=1 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 1.076e-22 Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = -2 Query: 124 ERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 438 E +LYV G L Y+RSK PN SLI+I+GV ++ +Y GKR+AY+ +A + G+ R +WGKV R+H NSG+VRA F++NL K+ G VR+F+YP+NI Sbjct: 3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_XENLA (60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 1.007e-20 Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = -2 Query: 124 KLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 429 +L+ T GYKR NQ +T+L++I+GV ++E +Y GKR AY+ KAK K N T R IWGKV R+H NSG+VRAKF+SNL K++G R+RV +YP+ I Sbjct: 4 RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGKPNRT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL33A_SCHPO (60S ribosomal protein L33-A OS=Schizosaccharomyces pombe GN=rpl33a PE=2 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 1.717e-20 Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = -2 Query: 124 QGERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 444 QG R LYV L ++RSK +P TSL++I+G + KEE +Y GKR+ ++ K+ G+ R IWG V+R H NSG+VRA+F NL PK+ G +RV +YP+N+ Sbjct: 4 QGHR--LYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_RAT (60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.997e-20 Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = -2 Query: 124 KLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 429 +L+ GYKR NQ +T+L++I+GV ++E +Y GKR AY+ KAK K N T R IWGKV R+H NSG+VRAKF+SNL K++G R+RV +YP+ I Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110 The following BLAST results are available for this feature:
BLAST of CF834888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834888 ID=CF834888; Name=CF834888; organism=Citrus sinensis; type=EST; length=502bpback to top |