CF834897

Overview
NameCF834897
Unique NameCF834897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2738 contig Csv1_Contig2738:36..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834897 vs. ExPASy Swiss-Prot
Match: PFD4_AVEFA (Probable prefoldin subunit 4 OS=Avena fatua GN=VIP3 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.404e-42
Identity = 81/125 (64.80%), Postives = 99/125 (79.20%), Query Frame = 1
Query:   22 EQAEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEED 396
            +Q + ++  VTWEDQQNIN+F +LNNRFHEL DEI+ AKE N+NLEDAGNELIL DED+VRFQIGEVFAH+P ++VE R+E+MKE  +            +LAQM ELKKILYGKF+D+INLEED
Sbjct:    2 QQGDGTEAQVTWEDQQNINRFGRLNNRFHELTDEIRLAKEANENLEDAGNELILCDEDVVRFQIGEVFAHMPMDDVEARLEQMKEDAAKKLERLEEEKESILAQMAELKKILYGKFKDAINLEED 126          
BLAST of CF834897 vs. ExPASy Swiss-Prot
Match: PFD4_ARATH (Probable prefoldin subunit 4 OS=Arabidopsis thaliana GN=API3 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.660e-38
Identity = 78/120 (65.00%), Postives = 93/120 (77.50%), Query Frame = 1
Query:   37 SDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEED 396
            S+  VTWEDQQNIN FS+LNNR H+L+D+IK AKE  +NLEDAGNELIL DE++VRFQIGEVFAHVPR++VET+IEEMKE               ++ QM  LKK+LY KF+DSINLEED
Sbjct:    9 SEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENLEDAGNELILADEEMVRFQIGEVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAALKKVLYAKFKDSINLEED 128          
BLAST of CF834897 vs. ExPASy Swiss-Prot
Match: PFD4_HUMAN (Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   22 EQAEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEED 396
            ++A   D  VT+EDQQ INKF++  +R  EL++EI+  K+   NLEDA ++++L D+D  ++ +QIG+VF    +EE +  +EE K+               +   + +LK  LY KF  +INLE D
Sbjct:    6 KKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEAD 132          
BLAST of CF834897 vs. ExPASy Swiss-Prot
Match: PFD4_BOVIN (Prefoldin subunit 4 OS=Bos taurus GN=PFDN4 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 47/127 (37.01%), Postives = 73/127 (57.48%), Query Frame = 1
Query:   22 EQAEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEED 396
            ++A   D  VT+EDQQ INKF++  +R  EL++EI+  K+   NLEDA  +++L D+D  ++ +QIG+VF    +EE +  +EE K+               +   + +LK  LY KF  +INLE D
Sbjct:    6 KKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACEDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEAD 132          
BLAST of CF834897 vs. ExPASy Swiss-Prot
Match: PFD4_YEAST (Prefoldin subunit 4 OS=Saccharomyces cerevisiae GN=GIM3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 42/123 (34.15%), Postives = 72/123 (58.54%), Query Frame = 1
Query:   25 QAEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED-IVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLE 390
            Q ++++T VT+EDQQ IN+FSKL  R   +  E+   +E  + L+D   E+ L DED  V++++G++F  + + +V  ++E+  E               + ++++ LK ILY KF D+INLE
Sbjct:    6 QGQRNNTQVTFEDQQKINEFSKLIMRKDAIAQELSLQREEKEYLDDVSLEIELIDEDEPVQYKVGDLFIFMKQSKVTAQLEKDAERLDNKIETLEDKQRDIDSRLDALKAILYAKFGDNINLE 128          
BLAST of CF834897 vs. ExPASy Swiss-Prot
Match: PFD4_DICDI (Probable prefoldin subunit 4 OS=Dictyostelium discoideum GN=pfdn4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 44/122 (36.07%), Postives = 65/122 (53.28%), Query Frame = 1
Query:   31 EKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDI-VRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEE 393
            E  +T V   DQ+ IN F +LNNR HEL  E K  +E  +   D+ ++L + D+D   ++ +GE F  V +E+ E+ IE+                  +  +  ELK ILY KF++SINLEE
Sbjct:   11 EVLETEVCAADQKMINLFGRLNNRKHELMREKKAKQEDLEKATDSQDDLFIADDDSKFKYSMGEAFLEVNKEDAESLIEKYINKLEEDIKKIDSDINDINEKHKELKVILYAKFKNSINLEE 132          
The following BLAST results are available for this feature:
BLAST of CF834897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PFD4_AVEFA9.404e-4264.80Probable prefoldin subunit 4 OS=Avena fatua GN=VIP... [more]
PFD4_ARATH1.660e-3865.00Probable prefoldin subunit 4 OS=Arabidopsis thalia... [more]
PFD4_HUMAN1.512e-1537.01Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 ... [more]
PFD4_BOVIN1.975e-1537.01Prefoldin subunit 4 OS=Bos taurus GN=PFDN4 PE=2 SV... [more]
PFD4_YEAST2.414e-1334.15Prefoldin subunit 4 OS=Saccharomyces cerevisiae GN... [more]
PFD4_DICDI3.485e-1236.07Probable prefoldin subunit 4 OS=Dictyostelium disc... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06E24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834897 ID=CF834897; Name=CF834897; organism=Citrus sinensis; type=EST; length=616bp
TCGAAATTCACCATTCAACATGAACAGGCTGAGAAATCTGATACGGTGGT
GACATGGGAAGATCAACAAAACATTAACAAATTTTCCAAATTAAACAACA
GATTCCACGAGCTTGAAGATGAAATCAAGTTTGCCAAGGAAACAAACGAT
AATCTGGAGGATGCAGGCAATGAATTGATTCTCACTGATGAAGACATAGT
TCGCTTCCAAATAGGCGAAGTCTTTGCTCATGTGCCAAGGGAAGAAGTGG
AGACCAGAATAGAAGAGATGAAAGAGGTGAATAGCAAAACTCTGGAAAAA
CTTGAGAAAGAGAAAGAAACTGTTCTGGCCCAAATGAATGAATTGAAGAA
GATTCTATACGGGAAGTTCAGGGACTCTATCAACTTAGAGGAGGATTAAT
ACACCATGACTGTCATTTCTCTGTAATTTGGTTGCCTCTCACTTTTGATT
TAAATATTAGGGATGACTTTACTCCAATCTTCAACTTGCAATTGAGTATC
CTGAGTGAAGCCAGTGCCGATTTTATTTACTACAAATTGGTTTTTTTTTT
TTTTTTGGTTCCAGATTTAGAACTGTCCAACTTGATATTAACAGGAATGA
AGTTGGCTGGAAAATG
back to top