CF834919

Overview
NameCF834919
Unique NameCF834919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834919 vs. ExPASy Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 3
Query:   18 VLPPECISPLISLTTPRDACRSSIACPIFKSAADSDYVWEKFLPSEYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIVNNG 266
            VLP +CIS +IS T+PRDAC ++     F+SA  SD VW+KFLP EYE                     YF LCHNP+++ +G
Sbjct:   63 VLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYES------LVSRSRVFASKKELYFALCHNPVLIEDG 139          
BLAST of CF834919 vs. ExPASy Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 3
Query:   21 LPPECISPLISLTTPRDACRSSIACPIFKSAADSDYVWEKFLPSEYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIVNNGTM 272
            LP  CIS +IS T+P DAC ++    IF+SA  SD VWEKFLP++YE                     YF LC++P+++ +G M
Sbjct:   27 LPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYES------LITPSRVFSSKKELYFSLCNDPLLIEDGKM 104          
BLAST of CF834919 vs. ExPASy Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = 3
Query:   21 LPPECISPLISLTTPRDACRSSIACPIFKSAADSDYVWEKFLPSEYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIVNNG 266
            LP +CIS +IS T+PRDAC ++     F+SA +SD VW+KFLPS+Y                      YF +C NP++V +G
Sbjct:   45 LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSS------LVPPSRVFSSKKELYFAICDNPVLVEDG 120          
The following BLAST results are available for this feature:
BLAST of CF834919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FB95_ARATH1.188e-1243.37F-box protein At2g02240 OS=Arabidopsis thaliana GN... [more]
SKIP3_ARATH3.823e-1140.48F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKI... [more]
PP2B2_ARATH8.517e-1140.24Putative F-box protein PP2-B2 OS=Arabidopsis thali... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834919 ID=CF834919; Name=CF834919; organism=Citrus sinensis; type=EST; length=706bp
CTGTGAAGATAACATTGGTTCTGCCACCAGAGTGCATTTCCCCCTTAATT
TCTCTTACAACTCCTCGCGATGCCTGCAGATCATCAATAGCATGTCCCAT
CTTCAAATCAGCTGCGGATTCAGATTATGTATGGGAGAAGTTTCTGCCGT
CCGAGTACGAGCAGATCATTTCCGATTCGGTCTCTGATTCATCTTTGATT
ACTTCTTTGTCTAAGAAGGATCTTTATTTTCATCTTTGTCACAACCCCAT
CATCGTCAATAATGGTACTATGGTAAGCCTAACTTTACTTTGTTCTTTTT
TTTTTTTAAATGTGTATGTCAAATTTATACGCAAAGCATATGTTGGATGA
TTAATTAAGCCATTAATTTTAGCGGATGATTGATCTGCTGATTAAACTAG
AAAATGGAATTCTAGTCAAGGGTCCAAATGAGAAATTGGTCAATTATAAG
AATCTTCTTTATCTGGATTGTCTGTCCTTAATTGATTTTGATTCTTAATT
TGTGACGGAATTTATTTTTCCCCTGGTTTTGGGCATAGTAAGCGCCGATA
ATTGCTCTGTTTTTGCTTGAGCTATTCGATTTTCTTATGAAATGAGTCAA
ATGACTAAATTAAAACACCATAGATGACTTGTTATGCATTGAAATATCCA
ATAAATGAGTTGCTAAATGACAAGGATTAATTGTCAACATTTGTGCTGAC
TAAGGC
back to top