CF834934

Overview
NameCF834934
Unique NameCF834934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2838 contig Csv1_Contig2838:5..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834934 vs. ExPASy Swiss-Prot
Match: MPCP_MOUSE (Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.189e-29
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 2
Query:  287 RRSFVVAAPSEPGKIEMYSPAFYAACTVGGILGCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACKFGF 580
            R   + AA  E    E  S  +YA C  GG+L CGLTHTAV PLDLVKC MQ+DP KYK I +GF + LKE G+RG  +GW PTL+GYS QG CKFGF
Sbjct:   38 RSRHLAAAAVEEYSCEFGSMKYYALCGFGGVLSCGLTHTAVVPLDLVKCRMQVDPQKYKGIFNGFSITLKEDGVRGLAKGWAPTLIGYSMQGLCKFGF 135          
BLAST of CF834934 vs. ExPASy Swiss-Prot
Match: MPCP_RAT (Phosphate carrier protein, mitochondrial OS=Rattus norvegicus GN=Slc25a3 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.084e-29
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 2
Query:  287 RRSFVVAAPSEPGKIEMYSPAFYAACTVGGILGCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACKFGF 580
            R   + AA  E    E  S  +YA C  GG+L CGLTHTAV PLDLVKC MQ+DP KYK I +GF + LKE G+RG  +GW PTL+GYS QG CKFGF
Sbjct:   37 RSRHLAAAAVEGYSCEFGSMKYYALCGFGGVLSCGLTHTAVVPLDLVKCRMQVDPQKYKGIFNGFSITLKEDGVRGLAKGWAPTLIGYSMQGLCKFGF 134          
BLAST of CF834934 vs. ExPASy Swiss-Prot
Match: MPCP_PONAB (Phosphate carrier protein, mitochondrial OS=Pongo abelii GN=SLC25A3 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.056e-28
Identity = 58/94 (61.70%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  299 VVAAPSEPGKIEMYSPAFYAACTVGGILGCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACKFGF 580
            + AA  E    E  S  +YA C  GG+L CGLTHTAV PLDLVKC MQ+DP KYK I +GF V LKE G+RG  +GW PT LGYS QG CKFGF
Sbjct:   46 LAAAAVEEYSCEFGSAKYYALCGFGGVLSCGLTHTAVVPLDLVKCRMQVDPQKYKGIFNGFSVTLKEDGVRGLAKGWAPTFLGYSMQGLCKFGF 139          
BLAST of CF834934 vs. ExPASy Swiss-Prot
Match: MPCP_HUMAN (Phosphate carrier protein, mitochondrial OS=Homo sapiens GN=SLC25A3 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.600e-27
Identity = 55/97 (56.70%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  290 RSFVVAAPSEPGKIEMYSPAFYAACTVGGILGCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACKFGF 580
            R+   AA  E    +  S  F+  C +GGI+ CG THTA+ PLDLVKC MQ+DP KYK I +GF V LKE G+RG  +GW PT LGYS QG CKFGF
Sbjct:   44 RNLAAAAVEEQYSCDYGSGRFFILCGLGGIISCGTTHTALVPLDLVKCRMQVDPQKYKGIFNGFSVTLKEDGVRGLAKGWAPTFLGYSMQGLCKFGF 140          
BLAST of CF834934 vs. ExPASy Swiss-Prot
Match: MPCP_BOVIN (Phosphate carrier protein, mitochondrial OS=Bos taurus GN=SLC25A3 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.396e-27
Identity = 55/97 (56.70%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  290 RSFVVAAPSEPGKIEMYSPAFYAACTVGGILGCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACKFGF 580
            R+   AA  E    +  S  F+  C +GGI+ CG THTA+ PLDLVKC MQ+DP KYKSI +GF V LKE G RG  +GW PT +GYS QG CKFGF
Sbjct:   44 RNLAAAAVEEQYSCDYGSGRFFILCGLGGIISCGTTHTALVPLDLVKCRMQVDPQKYKSIFNGFSVTLKEDGFRGLAKGWAPTFIGYSLQGLCKFGF 140          
BLAST of CF834934 vs. ExPASy Swiss-Prot
Match: MPCP_CAEEL (Phosphate carrier protein, mitochondrial OS=Caenorhabditis elegans GN=F01G4.6 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.201e-26
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  305 AAPSEPGKIEMYSPAFYAACTVGGILGCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACKFGF 580
            +A S PG++E  S  +YA C +GG+L CG+THTA+ PLDLVKC +Q++P KY  I++GF   + E+G R   +GW PTLLGYSAQG  KFGF
Sbjct:   27 SAVSAPGQVEFGSGKYYAYCALGGVLSCGITHTAIVPLDLVKCRIQVNPEKYTGIATGFRTTIAEEGARALVKGWAPTLLGYSAQGLGKFGF 118          
BLAST of CF834934 vs. ExPASy Swiss-Prot
Match: MPCP_CHOFU (Phosphate carrier protein, mitochondrial OS=Choristoneura fumiferana PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.060e-24
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  332 EMYSPAFYAACTVGGILGCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACKFG 577
            E  S  ++A C +GGIL CG+THTAV PLDLVKC +Q+D  KYK++ +GF V ++E+G+RG  +GW PT +GYS QG CKFG
Sbjct:   42 EFGSTKYFALCGLGGILSCGITHTAVVPLDLVKCRLQVDADKYKNVVNGFRVSVREEGLRGLAKGWAPTFIGYSLQGLCKFG 123          
BLAST of CF834934 vs. ExPASy Swiss-Prot
Match: MPCP_SCHPO (Probable mitochondrial phosphate carrier protein OS=Schizosaccharomyces pombe GN=SPBC1703.13c PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.477e-22
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  311 PSEPGK-IEMYSPAFYAACTVGGILGCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACKFGF 580
            P+ P K +++Y+P +Y  CT+GG+L CG TH+A+TPLDL+KC  Q++P  Y    +GF  +L ++G+RG + G +PTL+GYS QG  K+GF
Sbjct:    8 PAPPKKTLQLYTPQYYGLCTLGGLLACGTTHSAITPLDLIKCRKQVNPNIYPGNIAGFKTILSKEGLRGLYTGGMPTLIGYSLQGCGKYGF 98          
BLAST of CF834934 vs. ExPASy Swiss-Prot
Match: PIC2_YEAST (Mitochondrial phosphate carrier protein 2 OS=Saccharomyces cerevisiae GN=PIC2 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.528e-19
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  317 EPGKIEMYSPAFYAACTVGGILGCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACKFG 577
            +P KI++Y+  FYA CT+GGI+ CG TH+++TPLDLVKC +Q++P  Y S   GF  ++  +G +  + G+  T +GYS QGA K+G
Sbjct:    6 QPRKIQLYTKEFYATCTLGGIIACGPTHSSITPLDLVKCRLQVNPKLYTSNLQGFRKIIANEGWKKVYTGFGATFVGYSLQGAGKYG 92          
BLAST of CF834934 vs. ExPASy Swiss-Prot
Match: MCFN_DICDI (Mitochondrial substrate carrier family protein N OS=Dictyostelium discoideum GN=mcfN PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 2
Query:  341 SPAFYAACTVGGILGCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACKFGF 580
            +P+ +     GG L C +TH+ V PLD+VK  +Q +P KY  + +GF  ++KEQG  G  +G  PT +GY+ QG  KFGF
Sbjct:    6 TPSLFLKYGFGGALSCSITHSLVVPLDVVKTLLQTNPGKYTGMMNGFSTVIKEQGPSGLLQGLGPTAVGYALQGFLKFGF 85          
The following BLAST results are available for this feature:
BLAST of CF834934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MPCP_MOUSE6.189e-2959.18Phosphate carrier protein, mitochondrial OS=Mus mu... [more]
MPCP_RAT8.084e-2959.18Phosphate carrier protein, mitochondrial OS=Rattus... [more]
MPCP_PONAB1.056e-2861.70Phosphate carrier protein, mitochondrial OS=Pongo ... [more]
MPCP_HUMAN2.600e-2756.70Phosphate carrier protein, mitochondrial OS=Homo s... [more]
MPCP_BOVIN3.396e-2756.70Phosphate carrier protein, mitochondrial OS=Bos ta... [more]
MPCP_CAEEL2.201e-2655.43Phosphate carrier protein, mitochondrial OS=Caenor... [more]
MPCP_CHOFU2.060e-2457.32Phosphate carrier protein, mitochondrial OS=Choris... [more]
MPCP_SCHPO1.477e-2248.35Probable mitochondrial phosphate carrier protein O... [more]
PIC2_YEAST1.528e-1947.13Mitochondrial phosphate carrier protein 2 OS=Sacch... [more]
MCFN_DICDI4.306e-1443.75Mitochondrial substrate carrier family protein N O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06F23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834934 ID=CF834934; Name=CF834934; organism=Citrus sinensis; type=EST; length=580bp
CTTTGCCCGGCTTTATAAGAATTGGAAGCGAGAGACAGGAGGAGGAGAAC
ACCTTTAGAAAATTAGAAGAATTCTCTCTGTCTCGCTCTTTTTCTCTATA
ATTCAATCAAGCTTTTTACTCTCAAACTCAAATTTCAAAAATTCCGAAAT
GGCCCTCACAGAATGGGATAGGAAAAACTCTCTGATACCAAGCTACCTCT
ACTCCTCCCAAACATCCTTCCCGTCCACGGCGGCTTTCAATGGAGCGGCA
GCAGCCGCCACGTCGCCGGCTACTCCATCCACGGCGAGGAGGAGCTTCGT
TGTTGCGGCACCGAGCGAGCCAGGGAAGATAGAGATGTACTCCCCTGCAT
TCTACGCCGCTTGTACCGTCGGCGGGATCCTCGGGTGCGGTCTCACTCAC
ACGGCCGTCACTCCTCTTGACCTCGTCAAGTGCAATATGCAGATTGATCC
TGTTAAGTATAAAAGCATATCATCTGGTTTTGGAGTTTTGCTCAAGGAAC
AGGGAATCAGGGGCTTCTTCAGGGGATGGGTACCTACCTTGCTTGGTTAC
AGCGCCCAAGGTGCTTGCAAGTTTGGATTC
back to top