CF834962

Overview
NameCF834962
Unique NameCF834962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1793 contig Csv1_Contig1793:165..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.536e-41
Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 3
Query:   72 MALPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVGKTS 389
            M+L KA+E VS N V  FSKT+CPFCVS ++L  +LG TFKA+EL+ E DGS+IQ+ALAEWTGQ+TVPNVFIG KHIGGCD+TTALHREGKL+PLLTEAGA+ KTS
Sbjct:    1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.924e-41
Identity = 78/102 (76.47%), Postives = 89/102 (87.25%), Query Frame = 3
Query:   72 MALPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            MA+ KAQE VSSNSVV FSKTFCP+C S ++L  QLG  FK IEL+ ESDGSD+Q+ALAEWTGQ+TVPNVFIGGKHIGGCD TT +H+EGKL+PLLTEAGAV
Sbjct:    1 MAMIKAQELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.250e-39
Identity = 77/107 (71.96%), Postives = 92/107 (85.98%), Query Frame = 3
Query:   72 MALPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV-GKTS 389
            MA+ KA+E V+S SVV FSKT+CP+CV  +EL QQLG  FKA+EL+ ESDGS IQS LAEWTGQ+TVPNVFIGG HIGGCD+T+ LH++GKLVPLLTEAGA+ GKT+
Sbjct:    1 MAMQKAKEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 107          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 4.245e-39
Identity = 76/106 (71.70%), Postives = 92/106 (86.79%), Query Frame = 3
Query:   72 MALPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVGKTS 389
            MAL KA+ETV+S  VV +SK++CPFCV  ++LF+QLG TFKAIEL+ ESDGS++QSALAEWTGQ+TVPNVFI GKHIGGCD T AL+ EGKLVPLLTEAGA+  ++
Sbjct:    1 MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSA 106          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.594e-38
Identity = 73/102 (71.57%), Postives = 88/102 (86.27%), Query Frame = 3
Query:   72 MALPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            MA+ K +E VSSN+VV FSKT+CP+C S ++L  QLG  +K +EL+ ESDGS+IQ+ALAEWTGQ+TVPNVFIGGKHIGGCDSTTA H +G+LVPLLTEAGAV
Sbjct:    1 MAMTKTKELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.370e-34
Identity = 68/114 (59.65%), Postives = 87/114 (76.32%), Query Frame = 3
Query:   48 LKDKEDTEMALPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVGKTS 389
            L++     MAL KA+E V+S+ VV FSKT+CPFC   + L  +L  ++KA+EL+ ESDGS++QSALA+WTGQ+TVP VFI GKHIGGCD T A+H+ G LVPLLTEAGA+   S
Sbjct:   19 LEEPSKPVMALDKAKEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIATPS 132          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.026e-32
Identity = 65/112 (58.04%), Postives = 84/112 (75.00%), Query Frame = 3
Query:   57 KEDTEMALPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVGKTSA 392
            KE+ E+ + KA+E VS+  VV FSKT+C +C   ++L  QLG TFK +EL++ SDG +IQSAL+EWTGQ TVPNVFI G HIGGCD     +++GKLVPLLTEAGA+   S+
Sbjct:   12 KEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNSS 123          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.266e-23
Identity = 49/98 (50.00%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   78 LPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 371
            + K +  + ++ ++ FSKT CP+C+S ++LF++L V    +EL+ ESDGS++QSA  + +G +TVP VFI  K IGGCD+TT LH +GKL+PLL EAG
Sbjct:    1 MDKVKALIKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.284e-19
Identity = 43/100 (43.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:   60 EDTEMALPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 359
            + T   + + QET+S+N VV FSKT C +C   +++F  + V +KA+EL+    G+  Q AL + TG++TVP +F+ G+ IGG   T  LH+EGKL+PL+
Sbjct:   44 KSTTTPVNQIQETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQDALHKMTGERTVPRIFVNGRFIGGAADTHRLHKEGKLLPLV 143          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX2_BOVIN (Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.190e-19
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:   90 QETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 359
            QET+S+N VV FSKT C +C   + LF  + V +K +EL+    GS  Q AL + TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   55 QETISNNCVVIFSKTSCSYCTMAKNLFHDMNVNYKVVELDMLEYGSQFQDALHKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 144          
The following BLAST results are available for this feature:
BLAST of CF834962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GLRX_SOLLC4.536e-4173.58Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GLRX_VERFO5.924e-4176.47Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC2_ARATH3.250e-3971.96Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GRXC6_ORYSJ4.245e-3971.70Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GLRX_RICCO3.594e-3871.57Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC4_ORYSJ5.370e-3459.65Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH5.026e-3258.04Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI3.266e-2350.00Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GLRX2_MOUSE1.284e-1943.00Glutaredoxin-2, mitochondrial OS=Mus musculus GN=G... [more]
GLRX2_BOVIN2.190e-1947.78Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLR... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834962 ID=CF834962; Name=CF834962; organism=Citrus sinensis; type=EST; length=605bp
TACATCATATAGGATTTGAAGNTNATTTAGGGTTTGTGAGATTTCCCCTC
AAAGACAAAGAAGACACAGAAATGGCTTTGCCCAAGGCCCAGGAAACCGT
TTCCTCCAATTCCGTCGTCGCTTTCAGCAAAACGTTTTGTCCGTTCTGCG
TGAGTGGCAGAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGGCCATT
GAACTGAACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCTGA
GTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACACA
TTGGTGGCTGCGATTCAACTACTGCACTGCACAGGGAAGGGAAGCTGGTT
CCTCTGCTCACTGAAGCTGGAGCTGTGGGCAAGACATCTGCCTGATGGAT
GGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGTTGGTA
GTGCTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAGTAATT
TCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTGTATGA
ATTTTATCAGATTTTTCATCTACTATATCCATGTAGAGTCATTTCTACTG
TAAAA
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