CF834966

Overview
NameCF834966
Unique NameCF834966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.390e-73
Identity = 131/159 (82.39%), Postives = 149/159 (93.71%), Query Frame = -2
Query:  297 AAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL--APRAMEKSKIR 767
            AAKAQ+VGWPP+RS+RKN+LATT KN+DEVDG+PG GALF+KVSMDGAPYLRKVDLR+YTNYGELSSALEKMF+ FT+GQCGS+ A G++MLSE+KLKDLL+G +YVLTYEDKDGDWMLVGDVPWEMFID CK+LKIMKG DAIGL  APRAMEKSK+R
Sbjct:  179 AAKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMR 337          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.450e-70
Identity = 127/156 (81.41%), Postives = 144/156 (92.31%), Query Frame = -2
Query:  303 AAKAQVVGWPPIRSFRKNSLAT-TSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSK 767
            AAKAQVVGWPPIRS+RKN++A+ TSKN DEVDGKPG G LF+KVSMDGAPYLRKVDLRTYT+Y +LSSALEKMFSCFT+GQCG H A GRE +SE KLKDLLHGSE+VLTYEDKDGDWMLVGDVPWE+F ++C++LKIMKGSD+IGLAP A+EKSK
Sbjct:  161 AAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSK 316          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.964e-59
Identity = 116/167 (69.46%), Postives = 136/167 (81.44%), Query Frame = -2
Query:  294 AAKAQVVGWPPIRSFRKNSLATTSK----NN---DEVDGKPGPG--ALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 767
            A+KAQVVGWPPIRSFRKNS+A++      NN   +E + K GP    L++KVSM+GAPYLRK+DL+TY +Y ELSSALEKMFSCFTIGQ GSH   GR+ L+ES+L DLL GSEYV+TYEDKD DWMLVGDVPWEMFI SCK+L+IMK S+AIGLAPR MEK + RN
Sbjct:  139 ASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.838e-57
Identity = 116/165 (70.30%), Postives = 131/165 (79.39%), Query Frame = -2
Query:  294 AAKAQVVGWPPIRSFRKNSLATTS-KNNDEVDG---KPGPGAL---FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 767
            A KAQVVGWPP+RS+RKN LA  + K  D  DG   K G GA    F+KVSMDGAPYLRKVDL+ Y +Y ELS ALEKMFS FTIG CGSH   G   ++ESK+ DLL+GSEYV TYEDKDGDWMLVGDVPWEMF++SCKRL+IMKGS+AIGLAPRAMEK K R+
Sbjct:  116 APKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNG---MNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.654e-56
Identity = 108/163 (66.26%), Postives = 128/163 (78.53%), Query Frame = -2
Query:  294 AAKAQVVGWPPIRSFRKNSLATTS-----KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 767
            AAKAQVVGWPPIRS+RKN++A +      K++ E    P  G L++KVSMDGAPYLRKVDL+ Y NY ELS ALEKMFSCFT+G   S+   GR+ LS+ +L DL +G+E VLTYEDKD DWMLVGDVPW MF DSC+RL+IMKGSDA+GLAPRA +KSK RN
Sbjct:  104 AAKAQVVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNRN 266          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.180e-52
Identity = 107/160 (66.88%), Postives = 126/160 (78.75%), Query Frame = -2
Query:  294 AAKAQVVGWPPIRSFRKNSLATTS--KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 767
            AAKAQVVGWPPIRS+RKN++AT     + ++ + K G G L++KVSMDGAPYLRKVDL+TY NY +LS+ALEKMF  FT G+ G         LSES+ KD     EYVLTYEDKDGDWMLVGDVPWEMF +SC+RL+IMKGSDAIGLAPRA++KSK RN
Sbjct:  112 AAKAQVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTGKDG---------LSESR-KD----GEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNRN 257          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.180e-52
Identity = 102/159 (64.15%), Postives = 120/159 (75.47%), Query Frame = -2
Query:  294 AKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAI--GLAPRAMEKSKIRN 764
            AK QVVGWPP+RSFRKN LA      +E +    P A F+KVSMDGAPYLRKVDL+ Y +Y ELS +L KMFS FT G C S     ++ ++ESKL DLL+ S+YV TYEDKDGDWMLVGDVPWEMF++SCKRL+IMKG +AI  GLAPRAM K K R+
Sbjct:   87 AKTQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGM--KDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 243          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.571e-51
Identity = 105/160 (65.62%), Postives = 120/160 (75.00%), Query Frame = -2
Query:  294 AAKAQVVGWPPIRSFRKNSLATTS--KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 767
            AAKAQVVGWPPIRS+RKN++AT     N ++VD K G G L++KVSMDGAPYLRKVDL+TY NY ++S  LEKMF  F+ G+ G+              KD     EYVLTYEDKDGDWMLVGDVPWEMF DSC+RL+IMKGSDAIGLAPRA EKSK RN
Sbjct:  119 AAKAQVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFSTGKEGAENQ-----------KD----GEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLAPRAGEKSKNRN 263          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.358e-51
Identity = 102/172 (59.30%), Postives = 127/172 (73.84%), Query Frame = -2
Query:  294 AKAQVVGWPPIRSFRKNSLA-------TTSKNNDEVDGKPGPGA--------LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 764
            AKAQVVGWPP+RSFRKN ++         ++ ND+  G  G  +         ++KVSMDGAPYLRK+DL+ Y  Y +LS+AL KMFS FTIG  G      ++ ++ESKL DLL+GS+YV TYEDKDGDWMLVGDVPWEMF+DSCKR++IMKGS+AIGLAPRA+EK K R+
Sbjct:   67 AKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.769e-51
Identity = 93/155 (60.00%), Postives = 121/155 (78.06%), Query Frame = -2
Query:  306 AAKAQVVGWPPIRSFRKNSLATTS-KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKS 767
            AAKAQVVGWPP+RS+RKN+LA ++ K   E  GK   G  ++KVSMDGAPYLRKVDL+TY++Y +LS ALEKMFSCF  G+  SH+   R+ L++    D L   EYVLTYEDKD DWMLVGD+PW++F  SC++L+IM+GSDA G+APR++E++
Sbjct:  123 AAKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQT 277          
The following BLAST results are available for this feature:
BLAST of CF834966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA9_ARATH2.390e-7382.39Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA8_ARATH1.450e-7081.41Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA27_ARATH1.964e-5969.46Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA30_ORYSJ1.838e-5770.30Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA21_ORYSJ2.654e-5666.26Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
IAA17_ORYSJ5.180e-5266.88Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
AUX28_SOYBN5.180e-5264.15Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA3_ORYSJ2.571e-5165.63Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA16_ARATH3.358e-5159.30Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA19_ORYSJ9.769e-5160.00Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834966 ID=CF834966; Name=CF834966; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTTTAACCTTTTAAGATCCCTGTCACTATATAGATATATAACTCCA
CCAATCCTAATTTTCTTAGTATCTTAACATGGTTTTACAACAATCATATC
ATAAACATAGACTTCTTCCAAACTTAAAAAAGTAACACAAACCTCATGTA
AACAAACAGGATACACAACTAAACCACAAACTTGCATCTTGCCCATGCCA
TCCTGTCCTTTTTAACTTTTCATCAACCCAGTCTCCTCCTACCCATGAAA
GGCATGAACTAGAAGGCACCCCATCCCAGCCAGGCATTCACTAGTTCCTG
ATCTTGGATTTTTCCATTGCCCTGGGAGCTAAGCCAATGGCATCAGAACC
TTTCATGATCTTTAATCGCTTGCATGAATCAATAAACATCTCCCACGGCA
CATCCCCAACGAGCATCCAGTCACCATCCTTGTCCTCATATGTAAGCACA
TATTCTGATCCATGCAAAAGATCCTTCAACTTGCTCTCACTCAGCATTTC
CCTCCCTGGTGCTTCATGTGATCCACATTGACCAATTGTAAAGCAACTGA
ACATCTTCTCCAGAGCAGAAGATAGTTCCCCATAATTGGTGTATGTTCTC
AAATCTACCTTCCTCAAATAAGGAGCACCGTCCATGCTAACCTTAATAAA
AAGAGCACCAGGACCTGGTTTTCCATCTACTTCATCATTGTTCTTTGAAG
TGGTTGCCAATGAATTCTTCCTAAATGATCTTATTGGAGGCCAACCCACG
ACCTGTGCCTTGGCAGCA
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