CF834982

Overview
NameCF834982
Unique NameCF834982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 5.936e-14
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 2
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL  SEG KGT+ F QE    T +T +++ LK G HGFHVH  G
Sbjct:    3 KAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALG 50          

HSP 2 Score: 43.5134 bits (101), Expect = 5.936e-14
Identity = 20/47 (42.55%), Postives = 27/47 (57.45%), Query Frame = 1
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINV 405
            + C  +G H+NP +K H    D  E+RH GDLGN+      + NINV
Sbjct:   54 NGCMSTGPHYNPASKEHGAPED--ENRHAGDLGNVTAGADGVANINV 98          
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 7.713e-14
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 2
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL  SEG KGT+ F QE    T +T +++ LK G HGFHVH  G
Sbjct:    3 KAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALG 50          

HSP 2 Score: 44.2838 bits (103), Expect = 7.713e-14
Identity = 21/47 (44.68%), Postives = 26/47 (55.32%), Query Frame = 1
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINV 405
            + C  +G HFNP  K H    D  E+RH GDLGNI      + N+NV
Sbjct:   54 NGCMSTGPHFNPTGKEHGAPQD--ENRHAGDLGNITAGADGVANVNV 98          
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 1.302e-13
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 2
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL  S+G KGT+ F QE    T +T +++ LK G HGFHVH  G
Sbjct:    3 KAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALG 50          

HSP 2 Score: 43.5134 bits (101), Expect = 1.302e-13
Identity = 20/47 (42.55%), Postives = 27/47 (57.45%), Query Frame = 1
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINV 405
            + C  +G H+NP +K H    D  E+RH GDLGN+      + NINV
Sbjct:   54 NGCMSTGPHYNPASKEHGAPED--ENRHAGDLGNVTAGADGVANINV 98          
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.198e-13
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 2
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL GSEG +GTV F QE    T IT +L+ LK G HGFHVH  G
Sbjct:    3 KAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALG 50          

HSP 2 Score: 39.2762 bits (90), Expect = 2.198e-13
Identity = 20/46 (43.48%), Postives = 26/46 (56.52%), Query Frame = 1
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNIN 402
            + C  +G HFNP  K H    D   +RH GDLGN+ V  G+ G +N
Sbjct:   54 NGCMSTGPHFNPAGKEHGAPED--GNRHAGDLGNVTV--GEDGTVN 95          
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.856e-13
Identity = 27/48 (56.25%), Postives = 31/48 (64.58%), Query Frame = 2
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL  SEG  GT+ F QE    T +T +LA LK G HGFHVH  G
Sbjct:    3 KAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALG 50          

HSP 2 Score: 40.817 bits (94), Expect = 2.856e-13
Identity = 20/51 (39.22%), Postives = 23/51 (45.10%), Query Frame = 1
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINVGPDG 417
            + C  +G HFNP N  H    D   H             GDLGN+NVG DG
Sbjct:   54 NGCLSTGAHFNPNNNEHGAPEDENRHA------------GDLGNVNVGDDG 92          
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 3.710e-13
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 2
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL  SEG KGT+ F QE    T +T +++ LK G HGFHVH  G
Sbjct:    3 KAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALG 50          

HSP 2 Score: 40.4318 bits (93), Expect = 3.710e-13
Identity = 21/47 (44.68%), Postives = 26/47 (55.32%), Query Frame = 1
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINV 405
            + C  +G HFNP    H    D  E RH GDLGN+ V  G+ G +NV
Sbjct:   54 NGCMSTGPHFNPAGNEHGAPED--ETRHAGDLGNVTV--GEDGTVNV 96          
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 53.9138 bits (128), Expect = 4.820e-13
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2
Query:  119 KAIAVLDGSEGFKGTVSFYQE-DGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL  SEG  GT+ F QE +G  T +T +L+ LK G HGFHVH  G
Sbjct:    3 KAVAVLSSSEGVSGTIFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALG 51          

HSP 2 Score: 41.2022 bits (95), Expect = 4.820e-13
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 1
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINV 375
            + C  +G H+NP  K H    D  EHRH GDLGN+ V
Sbjct:   55 NGCMSTGPHYNPHGKDHGAPDD--EHRHAGDLGNVTV 89          
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.783e-12
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 2
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+ VL  SEG  GTV F QE    T +T N++ L+ G HGFHVH  G
Sbjct:    3 KAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALG 50          

HSP 2 Score: 39.2762 bits (90), Expect = 1.783e-12
Identity = 22/43 (51.16%), Postives = 24/43 (55.81%), Query Frame = 1
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLG 393
            + C  +G HFNP  K H    D  E RH GDLGNI V  GD G
Sbjct:   54 NGCMSTGPHFNPAGKEHGAPED--ETRHAGDLGNITV--GDDG 92          
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 2.315e-12
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 2
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL  SEG  GT+ F QE    T +T N++ LK G HGFHVH  G
Sbjct:    3 KAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALG 50          

HSP 2 Score: 37.7354 bits (86), Expect = 2.315e-12
Identity = 20/51 (39.22%), Postives = 22/51 (43.14%), Query Frame = 1
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINVGPDG 417
            + C  +G HFNP  K H    D   H             GDLGNI VG DG
Sbjct:   54 NGCMSTGPHFNPAGKEHGAPGDDNRHA------------GDLGNITVGEDG 92          
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 5.073e-12
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 2
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            K +AVL  SEG  GT+ F QE    T +T N++ LK G HGFHVH  G
Sbjct:    3 KGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALG 50          

HSP 2 Score: 37.7354 bits (86), Expect = 5.073e-12
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 1
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINV 375
            + C  +G HFNP  K H    D  E RH GDLGN+ V
Sbjct:   54 NGCLSTGPHFNPAGKEHGAPDD--EVRHAGDLGNVTV 88          
The following BLAST results are available for this feature:
BLAST of CF834982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SODC4_MAIZE5.936e-1454.17Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC2_ORYSJ7.713e-1454.17Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC5_MAIZE1.302e-1352.08Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC_ZANAE2.198e-1360.42Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_SOYBN2.856e-1356.25Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODC_ANACO3.710e-1354.17Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC_SOLCS4.820e-1355.10Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC1_MESCR1.783e-1252.08Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_IPOBA2.315e-1254.17Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_PAUKA5.073e-1252.08Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834982 ID=CF834982; Name=CF834982; organism=Citrus sinensis; type=EST; length=471bp
TCGTTTCTCACCTTTATTTCATTTGATAATGGAGAAAGCAGCTTCACTAA
ACCTGGTAGCCCTTTTAGCTGTTTTATTTTGTTTTGTCAATATTGCAACC
AATTCAAGACCACATAGCAAAGCAATTGCTGTTCTTGACGGCAGTGAGGG
TTTCAAGGGAACTGTCTCCTTCTACCAGGAAGATGGCCATCATACAGTCA
TAACTGTAAACCTCGCTAATCTTAAGGCCGGTTCTCATGGATTCCATGTC
CACGAATCCGGATTCATTCGTGCTACTACAGTGGGAAACATTTTAACCCA
TTTAACAAATCTCATAGTGACATTCACGACCATGAGGAGCATCGTCATTA
TGGTGATTTAGGAAATATCAATGTTGATTATGGTGATTTAGGAAATATCA
ATGTTGGTCCTGATGGTCAGTATCTGCTGCACAAATTAAAGATCAATTTA
ATTATAAAAAAAAAAAAAAAA
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