CF834983

Overview
NameCF834983
Unique NameCF834983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:1228..1770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = -3
Query:  289 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKEYG--KLLKDFNKGLVNNK---DMEALKADVEKFASSFDMPG 540
            GD SAL P G+R+GTPA+TSRGLLEKDF+++  F HRG+ LTL+IQ + G    LK+F + L  +K    ++AL+ +VE FAS F +PG
Sbjct:  391 GDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 38/85 (44.71%), Postives = 66/85 (77.65%), Query Frame = -3
Query:  289 FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKEYGKLLKDFNKGLVNNKDMEALKADVEKFASSFDMPG 543
            +GD++A+APGGVR+G PA+TSRGL E+DF ++ +F  R V ++L+IQ + GK + DF + + +N+D++ ++ +V++F++ F MPG
Sbjct:  395 YGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPG 479          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.918e-18
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = -3
Query:  289 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKEYG--KLLKDFNKGLVNNK---DMEALKADVEKFASSFDMPG 540
            GD SAL P G+R+GTPA+TSRGLLEKDF+++  F HRG+ LTL+IQ + G    LK+F + L  +K    ++AL+  VE FAS F +PG
Sbjct:  391 GDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17
Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = -3
Query:  289 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKEYG--KLLKDFNKGLV----NNKDMEALKADVEKFASSFDMPG 540
            GD SAL P G+R+GTPA+TSRGLLEKDF+++  F HRG+ LT++IQ + G    LK+F + L     + + + AL+ +VE FA+ F +PG
Sbjct:  391 GDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 480          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17
Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  289 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKEYG--KLLKDFNKGLV----NNKDMEALKADVEKFASSFDMPG 540
            GD SAL P G+R+GTPA+TSRGLLE+DF+++  F HRG+ LTL+IQ   G    LK+F + L     +++ + AL+A+VE FA+ F +PG
Sbjct:  391 GDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = -3
Query:  289 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKEYG--KLLKDFNKGLVNNKDMEA----LKADVEKFASSFDMPG 540
            GD SAL P G+R+GTPA+TSRGLLE+DF+++  F HRG+ LTL+IQ        LK+F + L  ++ +++    L+ +VE FAS+F +PG
Sbjct:  385 GDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = -3
Query:  289 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKEYGKLLKDFNKGLVNN----KDMEALKADVEKFASSFDMPG 540
            GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F H GV +  +   E GK LKDF      N    KD+  L   VE+F++ F++PG
Sbjct:  416 GDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPG 503          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = -3
Query:  289 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKEYG--KLLKDFNKGLV----NNKDMEALKADVEKFASSFDMPG 540
            GD SAL P G+R+GTPA+TSRGLLE+DF ++  F HRG+ LTL+IQ   G    LK+F + L     + + + AL+A+VE FA+ F +PG
Sbjct:  391 GDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 42/99 (42.42%), Postives = 67/99 (67.68%), Query Frame = -3
Query:  259 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKE-YGKLLKDFNKGLVNNKDMEA----LKADVEKFASSFDMPGFKMSEMKYKD 540
            GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+F + VT+ L+++ E  G  LKDF   + ++  +++    L+ +VE+FA  F   GF+   MKYK+
Sbjct:  419 GDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517          
BLAST of CF834983 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.375e-16
Identity = 41/84 (48.81%), Postives = 62/84 (73.81%), Query Frame = -3
Query:  289 GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRGVTLTLEIQKEYGKLLKDFNKGLVNNKDMEALKADVEKFASSFDMPG 540
            GD++A++PGG+RIG+ A+TSRGL E DFE+I +F  R V+++LEIQ   GK L DF   +  +K++  L+ +VE+F+S F +PG
Sbjct:  373 GDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPG 456          
The following BLAST results are available for this feature:
BLAST of CF834983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GLYC_HUMAN8.611e-1952.81Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC2_DICDI1.125e-1844.71Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC_PONAB1.918e-1852.81Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_RABIT2.121e-1748.89Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_BOVIN2.121e-1750.00Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_MOUSE2.770e-1747.78Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_CAEEL2.770e-1748.86Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_SHEEP4.725e-1750.00Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYM_ARATH8.060e-1742.42Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC1_DICDI1.375e-1648.81Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834983 ID=CF834983; Name=CF834983; organism=Citrus sinensis; type=EST; length=545bp
TTTTTTTTTTTTTTTTTACTAAATTTGTTGTTTTATTTGTAGATCCCCTT
TAATCATTTGACCAAAGAGAAACGGATCTCACTTTCACAATATGGGTGGG
TACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCGTTTAAACCTAGG
ACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTCTCTTTCTGTTTT
TCAACACTAAAGAGTTGCTAACAACACAGTAACAATAATGATGATACTTT
GAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAAGCCGGGCATGTC
AAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGGCCTCCATGTCCT
TGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGCTTTCCATACTCC
TTTTGAATTTCCAACGTGAGGGTCACACCGCGGTGAAAAAACTCTCCAAT
TTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCATGGCAGGAGTAC
CGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCACCAAACA
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