CF834992

Overview
NameCF834992
Unique NameCF834992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5312 contig Csv1_Contig5312:113..645. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834992 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.448e-47
Identity = 88/113 (77.88%), Postives = 105/113 (92.92%), Query Frame = -1
Query:  197 VSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKVKALRDEQRATLDRIEAEYREQIAGLRRDPEAKEQKLAEQWSAKHLRLTKFLE-QMGCR 532
            +SEL+ECCRELEEGHRAWA HKKEAAWRLRR+ELQLESEK CR+REKMEEIEAK+KALR+EQ+  +++IE EYREQ+ GLRRD EAK+QKLA+QW+++H+RLTKFLE QMGCR
Sbjct:  251 LSELVECCRELEEGHRAWADHKKEAAWRLRRLELQLESEKTCRQREKMEEIEAKMKALREEQKNAMEKIEGEYREQLVGLRRDAEAKDQKLADQWTSRHIRLTKFLEQQMGCR 363          
BLAST of CF834992 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.557e-44
Identity = 82/113 (72.57%), Postives = 102/113 (90.27%), Query Frame = -1
Query:  197 VSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKVKALRDEQRATLDRIEAEYREQIAGLRRDPEAKEQKLAEQWSAKHLRLTKFLEQM-GCR 532
            V+ELMECCRE+EEG RAWAAH+KEAAWR++RVE+QLE+E+ACRRRE  EE EAK++ALR+EQ A ++R+EAEYRE++AGLRRD EAKEQK+AEQW+AKH RL KFL+Q+  CR
Sbjct:  211 VAELMECCREMEEGQRAWAAHRKEAAWRMKRVEMQLETERACRRREATEEFEAKMRALREEQAAAVERVEAEYREKMAGLRRDAEAKEQKMAEQWAAKHARLAKFLDQVAACR 323          
BLAST of CF834992 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.962e-36
Identity = 69/110 (62.73%), Postives = 90/110 (81.82%), Query Frame = -1
Query:  203 VSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKVKALRDEQRATLDRIEAEYREQIAGLRRDPEAKEQKLAEQWSAKHLRLTKFLEQMG 532
            ++EL ECCRELEEG RAWAAH++EAAWRL+RVE QLE E+  RRRE  EE EAK++ +R EQ A  +R+E ++RE++A LRRD + KE+K+AEQW+AKH R+ KF+EQMG
Sbjct:  247 LAELAECCRELEEGRRAWAAHRREAAWRLKRVEQQLEMEREMRRREVWEEFEAKMRTMRLEQAAAAERVERDHREKVAELRRDAQVKEEKMAEQWAAKHARVAKFVEQMG 356          
The following BLAST results are available for this feature:
BLAST of CF834992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AS1_ARATH1.448e-4777.88Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
RS2_ORYSJ2.557e-4472.57Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
RS2_MAIZE1.962e-3662.73Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06H21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834992 ID=CF834992; Name=CF834992; organism=Citrus sinensis; type=EST; length=532bp
AGTAGTAAATACCATTACAGTAATTATAGATAATATCTATAGCAGAATTC
CAGGCATACTGCCAGTGGGAACCTGTTCAGACATAGAAGATTACTTTAAC
GACACAAAATTCAAACCAAAAGGCCGGACCACGTACAGCATTGCCAATTG
TGTATTACTGATGTCCTCAACGGCCATTGGACTCAGAGAGCCTCGGCCTG
CACCCCATCTGCTCAAGAAACTTGGTAAGACGCAAGTGCTTTGCAGACCA
TTGCTCAGCCAGTTTCTGCTCCTTGGCTTCAGGATCCCTTCTTAGTCCAG
CAATCTGTTCCCTGTATTCTGCTTCGATCCTATCCAAAGTAGCCCTCTGC
TCATCCCTAAGAGCTTTCACCTTAGCCTCTATCTCCTCCATTTTCTCCCT
CCTCCGGCATGCTTTCTCTGATTCCAGCTGCAACTCTACCCTTCTCAATC
TCCATGCTGCTTCTTTCTTATGTGCTGCCCAAGCACGGTGCCCTTCTTCC
AATTCTCTACAGCACTCCATCAGCTCAGATAC
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