CF835000

Overview
NameCF835000
Unique NameCF835000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2220 contig Csv1_Contig2220:105..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: NEP1_MOUSE (Probable ribosome biogenesis protein NEP1 OS=Mus musculus GN=Emg1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.875e-31
Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = -3
Query:  316 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAACCIARICEALEDKW 714
            T K VL EV P  R+PRT+ RF G+M+QLL KLS+ A    +KLL+VIKNPV+ + PV   KIG S+S E +  +R  V S    D +VFVVGA AHGK+  +YT+ +++IS YPLSAA   A++  A E+ W
Sbjct:  112 TQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSVEDISDIRELVPS---SDPVVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKVTTAFEEVW 241          
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: EMG1_YEAST (Essential for mitotic growth 1 OS=Saccharomyces cerevisiae GN=EMG1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.873e-30
Identity = 61/136 (44.85%), Postives = 94/136 (69.12%), Query Frame = -3
Query:  313 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMAHGKIDC--DYTDDLIAISGYPLSAACCIARICEALEDKWN 714
            T +G+L EV P VR+PRT+KRF+G+M+QLL KLSI +V   EKLL+VIKNP+T +LP   RK+  S+ +  ++++++ +  + DD+++   VGAMA GK +   +Y D+ + +S YPLSA+   ++ C   ED WN
Sbjct:  116 TSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDA-PVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWN 250          
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: NEP1_HUMAN (Probable ribosome biogenesis protein NEP1 OS=Homo sapiens GN=EMG1 PE=1 SV=4)

HSP 1 Score: 130.183 bits (326), Expect = 1.092e-29
Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = -3
Query:  316 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAACCIARICEALEDKW 714
            T K VL EV P  R+PRT+ RF G+M+QLL KLS+ A    +KLL+VIKNPV+ + PV   K+G S+S   +  +R  V S    D +VFVVGA AHGK+  +YT+ +++IS YPLSAA   A++  A E+ W
Sbjct:  112 TQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPS---SDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVW 241          
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: NEP1_DROME (Probable ribosome biogenesis protein NEP1 OS=Drosophila melanogaster GN=CG3527 PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 63/138 (45.65%), Postives = 88/138 (63.77%), Query Frame = -3
Query:  316 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCV-----ASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAACCIARICEALEDKW 714
            T+  VL E+ P  R+PRT+KRFAG+M+QLL K  I A     +L+ VIKNP+T ++PV  +K   S+S + L   R+ V      S S D+ +V V+GA AHG +  DYT++L +IS YPLSAA   ++IC A E+ W
Sbjct:  112 TEHNVLIEINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRLMSVIKNPITDHVPVGCKKYAMSFSGKLLPNCRDLVPHGDETSASYDEPVVIVIGAFAHGVLKTDYTEELFSISNYPLSAAIACSKICSAFEEVW 249          
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: NEP1_CANAL (Nucleolar essential protein 1 OS=Candida albicans GN=NEP1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.743e-27
Identity = 60/135 (44.44%), Postives = 93/135 (68.89%), Query Frame = -3
Query:  316 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMAHGKIDC--DYTDDLIAISGYPLSAACCIARICEALEDKW 714
            T +GVL EV P VR+PRT+KRF+G+M+QLL KLSI +   +E LL+VIKNP+T +LP   RK+  S+ +E L ++++ V ++ +++++   VGAMA GK +   ++ D+ I +S YPLSA+   ++ C   ED W
Sbjct:  131 TARGVLIEVNPSVRIPRTFKRFSGLMVQLLHKLSIRSENSKEVLLKVIKNPITDHLPTKCRKVTLSFDAE-LKRVQDYVTTLDENESICVFVGAMARGKDNFADEFVDEKIGLSDYPLSASVACSKFCHGCEDVW 264          
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: NEP1_CAEEL (Probable ribosome biogenesis protein nep-1 OS=Caenorhabditis elegans GN=Y39A1A.14 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.130e-26
Identity = 62/133 (46.62%), Postives = 85/133 (63.91%), Query Frame = -3
Query:  316 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAACCIARICEALEDKW 714
            T K VL +V P  R+PRT+ RF G+M+QLL KLSI A    +KL+ V+KNPV+ +LPV SRK+  S++  +L  M N + +   D+ LV ++G +A GKI  DY D    IS YPLSAA   A++   LE+ W
Sbjct:   97 TSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPVSNHLPVGSRKMLMSFNVPELT-MANKLVAPETDEPLVLIIGGIARGKIVVDYNDSETKISNYPLSAALTCAKVTSGLEEIW 228          
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: MRA1_SCHPO (Multicopy suppressor of ras1 OS=Schizosaccharomyces pombe GN=mra1 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.565e-26
Identity = 63/133 (47.37%), Postives = 87/133 (65.41%), Query Frame = -3
Query:  322 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMAHGKIDCD--YTDDLIAISGYPLSAACCIARICEALED 714
            T K VL EV P VR+PRT+KRF+G+M+QLL KLSI +V   EKLL+VIKNPVT YLP N RK   S+ +   V  R  + ++  + ++   +GAMAHG  D    + D+ I+IS YPLSA+   ++   ++ED
Sbjct:  223 TAKKVLIEVNPSVRIPRTFKRFSGLMVQLLHKLSIRSVNGNEKLLKVIKNPVTDYLPPNCRKATLSFDA-PTVPPRKYLETLQPNQSVCIAIGAMAHGPDDFSDGWVDEKISISDYPLSASIACSKFLHSMED 354          
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: NEP1_CANGA (Nucleolar essential protein 1 OS=Candida glabrata GN=NEP1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25
Identity = 63/136 (46.32%), Postives = 84/136 (61.76%), Query Frame = -3
Query:  316 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAV-GKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMA--HGKIDCDYTDDLIAISGYPLSAACCIARICEALEDKW 714
            T K VL EV P VR+PRT+KRF+G+M+QLL KLSI ++      LLRV+KNPVT+YLP + RK+  S+ +E +         + D  ++   VGAMA  H     +Y DD IAIS YPLSA+   ++ C   ED W
Sbjct:   95 TKKNVLIEVNPSVRIPRTFKRFSGLMVQLLHKLSIRSMESSNTHLLRVVKNPVTKYLPADCRKVTLSFDAEVMRPQE----YLGDKQSVCVFVGAMARGHDSFADEYVDDKIAISNYPLSASVACSKFCHGAEDAW 226          
The following BLAST results are available for this feature:
BLAST of CF835000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NEP1_MOUSE9.875e-3150.38Probable ribosome biogenesis protein NEP1 OS=Mus m... [more]
EMG1_YEAST2.873e-3044.85Essential for mitotic growth 1 OS=Saccharomyces ce... [more]
NEP1_HUMAN1.092e-2948.87Probable ribosome biogenesis protein NEP1 OS=Homo ... [more]
NEP1_DROME4.149e-2945.65Probable ribosome biogenesis protein NEP1 OS=Droso... [more]
NEP1_CANAL1.743e-2744.44Nucleolar essential protein 1 OS=Candida albicans ... [more]
NEP1_CAEEL1.130e-2646.62Probable ribosome biogenesis protein nep-1 OS=Caen... [more]
MRA1_SCHPO9.565e-2647.37Multicopy suppressor of ras1 OS=Schizosaccharomyce... [more]
NEP1_CANGA1.632e-2546.32Nucleolar essential protein 1 OS=Candida glabrata ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06I02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835000 ID=CF835000; Name=CF835000; organism=Citrus sinensis; type=EST; length=716bp
TTTTTTTTTTTTTTTTTGAAAAAGAAAAAAAGGACGGATTCTCCTTGCAT
ACATGATGTTCCCTCTGCTCGTCCAAATAAACACCTAAATCTAATCCAAC
TAGTTTACAACCGAGTCCCAAAGATTCATACTCTCAAAAATTCTTTAGGT
TAGTATATAACCTAAAAAGTTCATCCCTCAGAACACAAACAATCCACAAG
CTCAGCATTTCCAGTTACACAAGTATCACTTTAAAAGTGAAATAAACAAT
TACTACAAGCTGGGAAAAGAAGAAAAAACAAAGAGAGAACTAAAAAGAGA
CGTTTACAACAGATTCCACTTATCCTCCAAAGCTTCGCAAATCCTTGCAA
TGCAACAGGCAGCACTCAGTGGATAGCCAGAAATTGCTATTAAATCATCT
GTGTAATCACAATCGATTTTCCCATGTGCCATTGCACCAACCACAAAAAC
AAGGTTGTCGTCATCACTGATGGAAGCCACACAATTCCTCATCTTAACCA
ATTTTTCTGAACTATATGAGAAACCTATCTTTCTGGAGTTTACAGGTAAA
TATTGGGTGACAGGATTCTTGATCACACGCAATAATTTCTCACGCTTGCC
AACAGCTGTTATGCTTAATTTTTGCAGCAGCTGCAACATGATACCAGCAA
AACGCTTATATGTCCTCGGTAGACGAACATGTGGTTTAACTTCAAAAAGA
ACACCTTTATCGGTTC
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