CF835048

Overview
NameCF835048
Unique NameCF835048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig151 contig Csv1_Contig151:526..1076. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835048 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.627e-50
Identity = 78/115 (67.83%), Postives = 99/115 (86.09%), Query Frame = -3
Query:  129 FSMAEPVPPKVFKHQDMSWTVWDRWILRATPTVRQLFQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYF 473
            FS+AEPVPPK  KHQ++SWTVWDRW +    T+R+L +WL++KGLNAYSIS G+ LL+NSMFPRHKER+D+KVVD+ R+VAK E+P YR+H DVVVAC D+DDND+DIP +S+YF
Sbjct:  936 FSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYF 1050          

HSP 2 Score: 37.7354 bits (86), Expect = 2.627e-50
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = -2
Query:  475 GHKLEDYRNAFANLALPL 528
            GHK+EDYRN FANLA+PL
Sbjct:  918 GHKVEDYRNTFANLAIPL 935          
BLAST of CF835048 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.627e-50
Identity = 78/115 (67.83%), Postives = 99/115 (86.09%), Query Frame = -3
Query:  129 FSMAEPVPPKVFKHQDMSWTVWDRWILRATPTVRQLFQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYF 473
            FS+AEPVPPK  KHQ++SWTVWDRW +    T+R+L +WL++KGLNAYSIS G+ LL+NSMFPRHKER+D+KVVD+ R+VAK E+P YR+H DVVVAC D+DDND+DIP +S+YF
Sbjct:  936 FSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYF 1050          

HSP 2 Score: 37.7354 bits (86), Expect = 2.627e-50
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = -2
Query:  475 GHKLEDYRNAFANLALPL 528
            GHK+EDYRN FANLA+PL
Sbjct:  918 GHKVEDYRNTFANLAIPL 935          
BLAST of CF835048 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.709e-45
Identity = 72/115 (62.61%), Postives = 93/115 (80.87%), Query Frame = -3
Query:  129 FSMAEPVPPKVFKHQDMSWTVWDRWILRATPTVRQLFQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYF 473
            FSMAEPVPPKV KH++ SWTVWDRW ++   T+ +L QW  DKGL AYSIS G+ LL+N+MF RHK+R+ KKVVD+ R+VAK ++P YR+H D+ VAC DED+ND+DIP +S+YF
Sbjct:  938 FSMAEPVPPKVMKHKETSWTVWDRWSVQGNLTLAELLQWFADKGLTAYSISCGTSLLYNNMFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYF 1052          

HSP 2 Score: 33.8834 bits (76), Expect = 6.709e-45
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = -2
Query:  475 HKLEDYRNAFANLALPL 525
            H +EDYRN FANLALPL
Sbjct:  921 HPVEDYRNTFANLALPL 937          
BLAST of CF835048 vs. ExPASy Swiss-Prot
Match: UBA1_CANAL (Ubiquitin-activating enzyme E1 1 (Fragment) OS=Candida albicans GN=UBA1 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.303e-12
Identity = 33/118 (27.97%), Postives = 67/118 (56.78%), Query Frame = -3
Query:  135 WFSMAEPVPPKVFKHQDMSWT-VWDRWILRATPTVRQLFQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISI 476
            +   +EP+     K+ +  +  +WDR+ L    T+++L    + ++GL    +SYG  LL+ S FP  + K+R+  K+  L+++V+K E+P + ++    + C DE+  D+++P I +
Sbjct:   86 FIGFSEPIKSPEGKYNNKKFDQIWDRFELNGDITLQELLDHFEKEEGLTISMLSYGVSLLYASFFPPKKVKDRLGLKLTSLIKEVSKKEVPSHVKNLIFEICCDDEEGEDVEVPYICV 203          

HSP 2 Score: 25.7942 bits (55), Expect = 4.303e-12
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = -2
Query:  472 LEDYRNAFANLALPLV 519
            +E Y+N F NLALP +
Sbjct:   72 IEQYKNGFINLALPFI 87          

HSP 3 Score: 20.4014 bits (41), Expect = 4.303e-12
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1
Query:  530 ELYKVVDG 553
            ELYKVVDG
Sbjct:   61 ELYKVVDG 68          
The following BLAST results are available for this feature:
BLAST of CF835048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UBE12_WHEAT2.627e-5067.83Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE11_WHEAT2.627e-5067.83Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBE13_WHEAT6.709e-4562.61Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
UBA1_CANAL4.303e-1227.97Ubiquitin-activating enzyme E1 1 (Fragment) OS=Can... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06J10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835048 ID=CF835048; Name=CF835048; organism=Citrus sinensis; type=EST; length=553bp
GATTGATACCCCTTTATTAACTCACCATAACAAATCCAGTACATCCTGCT
CCTTTTCACAAAGCATATCATTCATTTTTCATCCTACCAATAAATGTCCA
CTAATTAACTAGACGGAAACACCTAACTAAAGTAAATTGAGATTTGAGGA
ATATCAATATCATTGTCATCTTCATCCACGCATGCGACTACCACATCAAA
ATGTTGTCGATATGGAGGCAGTTCTGCCTTGGCCACATCCCTAACCAGAT
CCACCACCTTCTTGTCCATCCTTTCTTTGTGCCTCGGAAACATGCTGTTA
AAAAGCAAGCAACTCCCATAGGAGATGCTGTAAGCATTCAAGCCCTTGTC
CTGCAACCACTGAAAAAGTTGTCTTACTGTAGGGGTGGCCCGCAAAATCC
ACCGGTCCCACACAGTCCAGCTCATATCCTGATGCTTGAACACCTTAGGT
GGAACTGGCTCAGCCATCGAGAACCAGAGGGAGGGCCAAATTGGCAAAGG
CATTTCGGTAGTCTTCCAGTTTGTGCCCCACCATCTACAACCTTATAAAG
CTC
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