CF835055

Overview
NameCF835055
Unique NameCF835055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835055_ssr369 microsatellite CF835055_ssr369:369..380. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10964 contig Csv1_Contig10964:178..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835055 vs. ExPASy Swiss-Prot
Match: COGT2_ARATH (Cytokinin-O-glucosyltransferase 2 OS=Arabidopsis thaliana GN=UGT85A1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 54/196 (27.55%), Postives = 89/196 (45.41%), Query Frame = 1
Query:   82 HLLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVT----EEWLGFIGSQSKP--HNIRFRTLPNTIP-SEHGRANDFAGFLEAVFTKMEAPFXXXXXXXXXXXXXQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHFPFD----LSEK--GDELVDYIPGLEPTKLADFPT 630
            H++ +PYP +GH+NPMM + KLL +R     +TFV T      +L   GS +     + RF ++ + +P ++     D     E+      APF              P   V+ I++D  + + +DV     +P    WT S   F  + HF L    G  P      L+++   D ++D+IP ++  KL D P+
Sbjct:   13 HVVCVPYPAQGHINPMMRVAKLLHAR--GFYVTFVNTVYNHNRFLRSRGSNALDGLPSFRFESIADGLPETDMDATQDITALCESTMKNCLAPFRELLQRINAGDNVPP---VSCIVSDGCMSFTLDVAEELGVPEVLFWTTSGCAFLAYLHFYLFIEKGLCPLKDESYLTKEYLEDTVIDFIPTMKNVKLKDIPS 203          
The following BLAST results are available for this feature:
BLAST of CF835055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COGT2_ARATH2.296e-1327.55Cytokinin-O-glucosyltransferase 2 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06J14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835055 ID=CF835055; Name=CF835055; organism=Citrus sinensis; type=EST; length=687bp
TCTCAACTGAATTAGCTCCCATATATCAAGCGCCACTCATGCCCCTTTAA
TCCTGCCCAAGTAAAACCAACCAGCCTCTGCCACCTTTTGGCCCTGCCTT
ATCCCGGGAGAGGACACGTCAACCCCATGATGAACATTTGCAAGCTCTTA
GTTTCAAGGCAGCCTGATATCCTCATCACCTTTGTTGTGACAGAAGAGTG
GCTCGGATTCATTGGCTCACAGAGCAAGCCCCATAACATTCGATTCCGTA
CATTGCCTAACACCATACCCTCAGAGCATGGGCGCGCCAATGACTTTGCC
GGCTTCCTGGAGGCTGTGTTTACAAAGATGGAAGCTCCTTTTGAAGAGCT
CCTTGATCGTCTGCTTCTTGATGATGATGAGCAACCTGCGGCGGCAGTGA
CTGCTATTATAGCAGATACTTACTTGCCTTGGGTTGTTGACGTTGGCAAC
CGCAGGAACATTCCCGTAGCTTCCTTGTGGACGATGTCTGCACTTGTGTT
CTCTGTTTTTCATCACTTTGAACTTCTTGAAAGAAACGGCCATTTTCCGT
TTGATCTCTCAGAAAAGGGAGACGAGCTTGTGGACTACATCCCAGGACTT
GAACCGACGAAGTTGGCTGATTTTCCTACCATTTTTCACGGAGCTGGCAG
AAAAATTTTGCATGCGGCCCTGCAAAGTGCATCAAAG
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