CF835056

Overview
NameCF835056
Unique NameCF835056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3768 contig Csv1_Contig3768:1121..1723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835056 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.156e-35
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = -3
Query:  261 GWCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACLEPNTVASHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYPSGG 527
            GWCVPK G ++ +LQASLD+AC  GIDC  IQPGGAC EPN V SHAA+AMN+Y+Q S K P +CDFSKTAT+TSQNPSYN CVYP GG
Sbjct:  363 GWCVPKKGATNEELQASLDWACGHGIDCGAIQPGGACFEPNNVVSHAAYAMNMYFQKSPKQPTDCDFSKTATVTSQNPSYNNCVYPGGG 451          
BLAST of CF835056 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.357e-21
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = -3
Query:  258 WCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACLEPNTVASHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYPSGGT 524
            WCV K G+SD  LQA+LDYAC  G DC+P +P  +C  P+ V SH  +A+N ++Q   ++P +C+F  TAT T+ +PSY GC +P+  +
Sbjct:   21 WCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSYTGCAFPTSAS 109          
BLAST of CF835056 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.314e-21
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = -3
Query:  258 WCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACLEPNTVASHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYPSGGT 524
            WCV K G+SD+ LQ +LDYAC  G DC+P  P G+C  P+ V +H  +A+N ++Q   +   +C+F+ TATLT+ +PSY GC +PS  +
Sbjct:   21 WCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPSYTGCAFPSSAS 109          
BLAST of CF835056 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.695e-19
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  267 WCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACLEPNTVASHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYPS 524
            WCV K G +   LQ +++YAC   +DC PIQ GGAC  PN++ +HA++ MN YYQ +      CDF  T  +TS +PSY GC Y S
Sbjct:  377 WCVAKDGANGTDLQNNINYACGF-VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGCKYVS 461          
BLAST of CF835056 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.006e-16
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  270 WCVPKAGISDAQLQASLDYACSQG-IDCSPIQPGGACLEPNTVASHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYP 524
            +C+   G+    LQA+LD+AC  G  +CS IQPG +C +PN V  HA+FA N YYQ   +   +CDF   A +T+ +PS+  C++P
Sbjct:  272 YCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPSHGSCIFP 357          
BLAST of CF835056 vs. ExPASy Swiss-Prot
Match: E13L1_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.716e-16
Identity = 43/105 (40.95%), Postives = 56/105 (53.33%), Query Frame = -3
Query:  216 WCVPKAGISDAQLQASLDYACSQG-IDCSPIQPGGACLEPNTVASHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYPSG-GT*NGQTNSQLMLNNG 524
            WCV K    D+ LQ ++++AC QG  DC PIQ GG C +P  V   A+F  N YY  + +    C+F+  A LTS NPS   C YPS  G  NG+      +  G
Sbjct:   41 WCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPSQGTCKYPSSKGANNGRLADDTSMGAG 145          
BLAST of CF835056 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.242e-16
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = -3
Query:  273 WCVPKAGISDAQLQASLDYACSQG-IDCSPIQPGGACLEPNTVASHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVY 524
            WC+  +  S  +LQ +LD+AC  G +DCS +QP   C EP+TV SHA++A N YYQ S  +  +C F+  +    ++PSY  C+Y
Sbjct:  391 WCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGASSIDCSFNGASVEVDKDPSYGNCLY 475          
BLAST of CF835056 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.823e-16
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  231 WCVPKAGISDAQLQASLDYACSQG-IDCSPIQPGGACLEPNTVASHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYPSGGT*NGQTNSQL 524
            +C  + G     LQA+LD+AC  G IDCSPI+ G  C EP+ V +HA +A + YY  +  NP  C+F+  A++T+ +PS+  CV+ +G   NG+  + +
Sbjct:  368 YCTAREGADTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANYAFDTYYHQTGNNPDACNFNGVASITTTDPSHGTCVF-AGSRGNGRNGTSV 465          
BLAST of CF835056 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.453e-15
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  252 WCVPKAGISDAQLQASLDYACSQG-IDCSPIQPGGACLEPNTVASHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYPSGGT*N 524
            +C+ K  +    LQA+LD+AC  G +DCS +  G +C EP+ V +H+ +A N YYQ   K   +CDF   AT+T+ +PS   CV+P     N
Sbjct:  360 FCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPSRGTCVFPGSAKSN 451          
BLAST of CF835056 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.521e-15
Identity = 40/128 (31.25%), Postives = 68/128 (53.12%), Query Frame = -3
Query:  168 WCVPKAGISDAQLQASLDYACSQG-IDCSPIQPGGACLEPNTVASHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVY-PSGGT*NGQTNSQLMLN-------NGMLSEIKVMNLMVPILY 524
            WC+  +  S+  L+ +LD+AC  G +DC+ IQP   C +P+T+ SHA+F  N Y+Q +      C F       +++PSY+ C+Y  +GG     TN+  + +       N +L  I  + LM+ + +
Sbjct:  369 WCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRATDVACSFGGAGVKVNKDPSYDKCIYITAGGNKTKATNATALTSSASTPRGNELLQWILKLCLMISLFF 496          
The following BLAST results are available for this feature:
BLAST of CF835056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
E137_ARATH2.156e-3571.91Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E13L2_ARATH1.357e-2146.07Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
E13L3_ARATH2.314e-2146.07Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
E13B_WHEAT3.695e-1947.67Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E131_ARATH1.006e-1643.02Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E13L1_ARATH1.716e-1640.95Glucan endo-1,3-beta-glucosidase-like protein 1 OS... [more]
E1312_ARATH2.242e-1642.35Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E132_ARATH3.823e-1639.39Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E133_ARATH1.453e-1540.22Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E1313_ARATH5.521e-1531.25Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835056 ID=CF835056; Name=CF835056; organism=Citrus sinensis; type=EST; length=604bp
TTTTTTTTTTTTTTAGAATATATTCAAACAGTTTATTTCAACCACCCTCT
TGTTGTTTTCAATATAGGGTTACAAATAATTTTAATACCTAAGAAAAAAG
AGAAGAAAAGAAAGAGTTTCCTTGATACATTTTAATCAAAGGAGGAAACC
TTTACAATTAAAGCTATATATAAAATAGGAACCATTAGATTCATCACTTT
TATTTCGCTTAACATTCCATTATTCAACATCAACTGGGAATTCGTCTGGC
CGTTTCAAGTACCCCCACTAGGATAGACACATCCATTGTAACTGGGATTT
TGGGATGTGAGAGTTGCCGTTTTTGAGAAGTCGCAGTTCCATGGATTTTT
TGCAGAAGTCTGATAGTAGAGATTCATGGCAAAAGCAGCATGTGATGCTA
CTGTATTTGGTTCCAAACAGGCACCTCCTGGCTGGATAGGACTGCAATCG
ATGCCTTGGCTGCAGGCATAGTCAAGACTTGCCTGCAGTTGTGCATCGGA
GATGCCGGCCTTGGGCACACACCAACCAGCTGCTGTTGGTTTTGGTGATG
GAGTCGTTGGAGTTTTTGGAGTTGATGGAGTCACTGGAGCTGATGGAGTC
CTGG
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