CF835059

Overview
NameCF835059
Unique NameCF835059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835059_ssr315 microsatellite CF835059_ssr315:315..326. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10133 contig Csv1_Contig10133:11..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.508e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M +FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.508e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M +FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.508e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M +FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.508e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M +FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.508e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M +FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.508e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M +FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.508e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M +FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.508e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M +FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.508e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M +FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.508e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M +FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF835059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
UBIQ_WHEAT4.508e-3597.37Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN4.508e-3597.37Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU4.508e-3597.37Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC4.508e-3597.37Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR4.508e-3597.37Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA4.508e-3597.37Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ4.508e-3597.37Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY4.508e-3597.37Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE4.508e-3597.37Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO4.508e-3597.37Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835059 ID=CF835059; Name=CF835059; organism=Citrus sinensis; type=EST; length=672bp
CTGGAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCACCTCTTCGTG
AAAACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACAC
CATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGG
ACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACC
CTAGCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCG
TCTCCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGA
AAAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTT
TACAAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCC
GAATGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGC
ACTACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGT
GATTGATCGAGATTAGGTGGTTGTTTTGCTATTTTTAATTAGTATTAATT
ACTATGGTTTTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTG
ACTATATACTTGTTTGCTTGAGCGTTTTAATTAAATGGTTATCTGTTTTA
AATTTTAAAAAAAAAAAAAAAA
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