CF835129

Overview
NameCF835129
Unique NameCF835129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13367 contig Csv1_Contig13367:244..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835129 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.720e-20
Identity = 45/109 (41.28%), Postives = 72/109 (66.06%), Query Frame = -3
Query:  290 TTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPG---RERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLR 607
            +TY+ GAKV +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS+  R AN +GFMK +P+  CA+ LR
Sbjct:   47 STYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of CF835129 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 47/112 (41.96%), Postives = 71/112 (63.39%), Query Frame = -3
Query:  272 TTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEED 607
            T YIAGAKV++ECK   + ++  + +G TD+TGTY I + + H++ +C  VLV+SP+ DC  V   R+R+ V+LT   GIS   R AN +G+ K  P+  CA +L+    +D
Sbjct:   55 TEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of CF835129 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.155e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  293 IAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVL 598
            + GA VK++C++  +    +S EG TD  G YK+ V+ DH++ +C+  +V SP+ DCK    G E++R+  +   GI +  R+AN + FMKAE + GC E L
Sbjct:   50 LEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of CF835129 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.801e-17
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = -3
Query:  272 IAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLYQEED 598
            + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+  C  +L+ Y   D
Sbjct:   29 VQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of CF835129 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.383e-16
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = -3
Query:  269 TTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAP---GRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEEDV 607
            +T + GA VK+EC++  +    +  E  TD  G Y I V+ D +D +C+  LV SP ++C  V+     ++ ++V LTS NG +S+ R AN++GFM+ EP+  C EVL+     DV
Sbjct:   50 STIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165          
BLAST of CF835129 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.933e-16
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = -3
Query:  284 IAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLY 598
            + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+  C  +L+ Y
Sbjct:   29 VEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of CF835129 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 32/102 (31.37%), Postives = 57/102 (55.88%), Query Frame = -3
Query:  296 YIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEV 601
            +I GA ++++CKD+++  V ++  G T + G Y +LV  DH+++ C+  L+SS + DC  +         +    N ++  TR  N +GF K E +  CA+V
Sbjct:   33 FIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALPKCAQV 134          
BLAST of CF835129 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.767e-11
Identity = 31/102 (30.39%), Postives = 57/102 (55.88%), Query Frame = -3
Query:  296 YIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEV 601
            +I GA V+++CKD ++ +V ++  G T + G Y +L+  DH+++ C+  L+SS + DC  +         +    N ++  TR  N +GF+K E +  C +V
Sbjct:   33 FIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNGTTRTINPLGFLKKEVLPKCPQV 134          
The following BLAST results are available for this feature:
BLAST of CF835129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
OLEE1_BETVE2.720e-2041.28Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
PSC13_MAIZE2.302e-1941.96Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
LAT52_SOLLC2.155e-1739.22Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
PHLB_PHLPR4.801e-1738.18Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
CHE1_CHEAL2.383e-1637.93Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
LOLB_LOLPR6.933e-1637.74Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
ALL1_OLEEU9.370e-1331.37Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
LIGV1_LIGVU1.767e-1130.39Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06L14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835129 ID=CF835129; Name=CF835129; organism=Citrus sinensis; type=EST; length=624bp
GTCCATAGCGTTCAAGGCTGGAACCCATTTATTGTGAAAATAAATCAGGC
ATTACTAGCGATAACCCCTTTCTGGAAGCTAGAAGCACCAGCATATAAAT
AAATTAATAGAGTACACGTCCTTTAACAACAAATTAAGAACCCTCAAAAC
ATAGAAACAACACAGCCATCCAGGCACTACTAATAGAAGAGACAGTATGA
TAGCTGGGCCAACACAAAGCTTAAACAAATGGAAAGCGATAGAAAAAACC
ATGCCACACCATTCTCTACACATCCTCCTCCTGATATAGCCTGAGAACCT
CAGCACAGCCAGACATGGGCTCTGCCTTCATGAAGCCCATTGAATTGGCA
TATCGGGTTTCAGAAGAAATGCCGTTGTAACTGGTCAAGATCACACGGGA
ACGCTCACGCCCTGGGGCAACTGTTTTGCAGTCATTCTGGGGGCTGCTAA
CGAGGACAGCATCGCAAAGTTGATCCTGATGGTCTTCTGAAACGAGGATC
TTATATGTTCCAGTTGAGTCTGTTTTCCCTTCCCTGCTATATACTACTTG
CATTGACTTCCTGTCTTTGCATTCAACCTTCACCTTGGCACCGGCGATGT
AGGTGGTGCTGAGTTTTTTTTTTT
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