CF835165

Overview
NameCF835165
Unique NameCF835165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6019 contig Csv1_Contig6019:374..1047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF835165 vs. ExPASy Swiss-Prot
Match: TM208_DICDI (Transmembrane protein 208 homolog OS=Dictyostelium discoideum GN=tmem208 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 2 
Query:    2 KPTYIDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAYQSF-GFIKGFLPQGSEGDTE-DEKTLNKREKMEKKASRGK 292
            K TY ++GELIDGG D++ GG+  Y  D+IY+   +Q + ++S+K  Y  LVIPAF  ++ +  FI  +L   ++   +  E+   +REKMEKK  + K
Sbjct:   70 KLTYDNNGELIDGGSDLNQGGMTEYYFDIIYVCCIIQGLGLISDKCLYLILVIPAFAIFKIWKTFIGPYLASRNQQQQQPQEEKSKRREKMEKKQEKQK 168
The following BLAST results are available for this feature:
BLAST of CF835165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TM208_DICDI2.407e-1239.39Transmembrane protein 208 homolog OS=Dictyostelium... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06M14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835165 ID=CF835165; Name=CF835165; organism=Citrus sinensis; type=EST; length=671bp
CAAACCTACATATATTGATGATGGGGAACTTATTGATGGTGGATTTGATA
TGAGCACTGGTGGAATTTGTGGCTATTTACATGATGTTATCTACATCACA
AGCTTTGTGCAAGTCATGTCCATTCTCTCTGAAAAATTTTGGTACACATA
TCTGGTGATACCAGCATTTGGAGCGTACCAATCCTTTGGTTTCATTAAAG
GATTTTTGCCGCAAGGTTCAGAGGGAGACACGGAGGATGAAAAGACTCTC
AATAAGAGGGAAAAGATGGAGAAGAAGGCTTCACGAGGCAAGTTCGTCAA
GACAAGAACTATATAATCAAACATTTGAAGTGATCTTACTACAAGTACCA
GAAATGCTGCTCTTAAATTTCAGACTACCATGAAAAGAAGTTGAATCGTA
TTACATAACTTACTCAAGTCTGTAACATTGTCATGGCTAAATAGAAATTT
CACTTTCCTTGCCAAGTGAAAGAAAGGAGGAATTTTGATGTAATCAATGC
TTGGTAAGGTCTAGACAGTATTATCAATCATACTTCCTATGTACAAAATT
TTCTTCACTTGGTGTTGGAAGCAATTGTTATTGTTGCAGTCCTGTTTTAT
TTATACATAGAGCAGGTTCAGGATTGAGATGTGGCTTTTTAATTCATAAT
TGTTGTGGAATGAAATCACTA
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