CF835166

Overview
NameCF835166
Unique NameCF835166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835166 vs. ExPASy Swiss-Prot
Match: FATA_CORSA (Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) OS=Coriandrum sativum GN=FATA PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.114e-31
Identity = 68/104 (65.38%), Postives = 83/104 (79.81%), Query Frame = -1
Query:  223 QHVNNVTYIGWLLESMPQDVIVTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNG-SPPITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKK 531
            QHVNNV YIGW+LES+P++V+ THEL+TITLDYRRECQ DDVVDSLTS E  ED   V+K+ GTNG +   T  ++D+ +FLH LR+SG G EINRGR+ WRKK
Sbjct:  263 QHVNNVAYIGWVLESIPKEVLYTHELETITLDYRRECQHDDVVDSLTSPEVDEDT-AVTKIIGTNGHAAAATEARDDSLKFLHFLRVSGQGLEINRGRTEWRKK 365          
BLAST of CF835166 vs. ExPASy Swiss-Prot
Match: FATB_CUPHO (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.727e-16
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  223 QHVNNVTYIGWLLESMPQDVIVTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPPITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKK 531
            QHVNNV YIGW+LES P +V+ T EL ++TL+YRREC ++ V++SLT+ +P           G  GS           QF HLLRL  DG EI +GR+ WR K
Sbjct:  315 QHVNNVKYIGWILESTPPEVLETQELCSLTLEYRRECGRESVLESLTAMDP---------SGGGYGS-----------QFQHLLRLE-DGGEIVKGRTEWRPK 396          
BLAST of CF835166 vs. ExPASy Swiss-Prot
Match: FATB_GOSHI (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.562e-16
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  214 QHVNNVTYIGWLLESMPQDVIVTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPPITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKKPAR 531
            QHVNNV YIGW+LES P  ++ +HEL  +TL+YRREC +D V+ SLT+         V+               E N Q  HLLRL  DG+EI RGR+ WR K A+
Sbjct:  311 QHVNNVKYIGWILESAPLPILESHELSALTLEYRRECGRDSVLQSLTTVSDSNTENAVNV-------------GEFNCQ--HLLRLD-DGAEIVRGRTRWRPKHAK 400          
BLAST of CF835166 vs. ExPASy Swiss-Prot
Match: FATB_CINCA (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.508e-12
Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = -1
Query:  223 QHVNNVTYIGWLLESMPQDVIVTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPPITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKK 531
            QHVNN+ Y+ W+LE++P  +  +H + + T++YRREC  D V+ SLT+                       G  E      HLL+L G GSE+ R ++ WR K
Sbjct:  284 QHVNNIKYVDWILETVPDSIFESHHISSFTIEYRRECTMDSVLQSLTTVS--------------------GGSSEAGLVCEHLLQLEG-GSEVLRAKTEWRPK 365          
BLAST of CF835166 vs. ExPASy Swiss-Prot
Match: FATB_UMBCA (Lauroyl-acyl carrier protein thioesterase, chloroplastic OS=Umbellularia californica GN=FATB1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.281e-11
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = -1
Query:  223 QHVNNVTYIGWLLESMPQDVIVTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPPITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKK 531
            QHVNN+ Y+ W+ E++P  +  +H + + TL+YRREC +D V+ SLT+            + G +    +  D        HLL+L G GSE+ R R+ WR K
Sbjct:  284 QHVNNLKYVAWVFETVPDSIFESHHISSFTLEYRRECTRDSVLRSLTT------------VSGGSSEAGLVCD--------HLLQLEG-GSEVLRARTEWRPK 365          
The following BLAST results are available for this feature:
BLAST of CF835166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FATA_CORSA1.114e-3165.38Oleoyl-acyl carrier protein thioesterase, chloropl... [more]
FATB_CUPHO1.727e-1647.57Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_GOSHI6.562e-1646.23Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_CINCA7.508e-1234.95Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_UMBCA1.281e-1135.92Lauroyl-acyl carrier protein thioesterase, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06M15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835166 ID=CF835166; Name=CF835166; organism=Citrus sinensis; type=EST; length=531bp
AAGGGACCTACGTATGACCAGAATCAATTACATTCCCTCCTTGCTCAATC
TATCAATCATCAATCAATAGCTCTTAAGTTACTTGTCAACACAAACTCTA
TCCTCACAGCACATAAATTTGGAGCAAAGTCTATAGAGGAAAAGGAAACT
AGAGAGAAGAAAACATTTCTGGAACCCAGTGAAATAAGAGAACAAAACTT
AATTATTTCCTTATCTGGCAGGTTTCTTTCTCCACACTGAACGGCCCCGA
TTTATCTCCGAGCCATCACCTGATAGTCTCAGCAAGTGTAAAAATTGATG
ATTGTCCTCTTTGTCTCCAGTTATGGGAGGGGAGCCGTTTGTTCCCTGAA
GTTTTGAAACTGGTTCTGCATCCTCGAATGGTTCTGCACTTGTTAGGGAA
TCAACTACATCGTCCTGTTGGCATTCTCGTCTGTAATCTAAGGTGATAGT
CTGGAGTTCGTGGGTGACGATGACATCTTGAGGCATGCTCTCAAGTAACC
AACCAATGTAGGTGACATTATTAACATGCTG
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