CF835190

Overview
NameCF835190
Unique NameCF835190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1240 contig Csv1_Contig1240:13..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835190 vs. ExPASy Swiss-Prot
Match: SRP09_ARATH (Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana GN=SRP9 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.798e-50
Identity = 93/103 (90.29%), Postives = 99/103 (96.12%), Query Frame = -2
Query:  155 MVYVTSWDEFVERSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 463
            MVY+ SWDEFV+RSVQL++ADP+STRY MKYRHCDGKLVLKVTDNKECLKFKTDQAQ+AKKMEKLNNIFF LMARGPDVDLSEVTGKEQME QPAKKGRGRKQ
Sbjct:    1 MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAKKMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103          
BLAST of CF835190 vs. ExPASy Swiss-Prot
Match: SRP09_MAIZE (Signal recognition particle 9 kDa protein OS=Zea mays GN=SRP9 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.817e-45
Identity = 85/103 (82.52%), Postives = 95/103 (92.23%), Query Frame = -2
Query:  155 MVYVTSWDEFVERSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 463
            MVYV SW+EFVERSVQL++ DP +TRY MKYRHC+GKLVLKVTD++ECLKFKTDQAQDAKKMEKLNNIFFALM RGPDVD+SEV+GKEQ E Q AKKGRGR+Q
Sbjct:    1 MVYVDSWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103          
BLAST of CF835190 vs. ExPASy Swiss-Prot
Match: SRP09_DICDI (Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum GN=srp9 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.994e-16
Identity = 34/71 (47.89%), Postives = 55/71 (77.46%), Query Frame = -2
Query:  248 VYVTSWDEFVERSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFAL 460
            +Y+  WDEF ++S QLY+ DP+ TR+  K+RH +GK+VLKVT++   LKF+TD+  D K+++++N++FF L
Sbjct:    1 MYIEDWDEFYDKSEQLYRTDPKRTRFSFKFRHVEGKVVLKVTNDTVNLKFQTDKENDFKRIDQINSLFFRL 71          
BLAST of CF835190 vs. ExPASy Swiss-Prot
Match: SRP09_CAEEL (Signal recognition particle 9 kDa protein OS=Caenorhabditis elegans GN=ZK512.4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = -2
Query:  263 MVYVTSWDEFVERSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNN 463
            M Y TSWDEF + + +L+ A+P+  R+  KY H  G+LVLK+TD+  CL++ T+Q QD KK+EKL++
Sbjct:    1 MTYFTSWDEFAKAAERLHSANPEKCRFVTKYNHTKGQLVLKLTDDVVCLQYSTNQLQDVKKLEKLSS 67          
BLAST of CF835190 vs. ExPASy Swiss-Prot
Match: SRP09_HUMAN (Signal recognition particle 9 kDa protein OS=Homo sapiens GN=SRP9 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = -2
Query:  245 SWDEFVERSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALM 448
            +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL +KTDQAQD KK+EK ++    LM
Sbjct:    6 TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFHSQLMRLM 73          
BLAST of CF835190 vs. ExPASy Swiss-Prot
Match: SRP09_CANFA (Signal recognition particle 9 kDa protein OS=Canis familiaris GN=SRP9 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = -2
Query:  245 MVYVTSWDEFVERSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALM 463
            M    +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL ++TDQAQD KK+EK ++    LM
Sbjct:    1 MAQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTDDLVCLVYRTDQAQDVKKIEKFHSQLMRLM 73          
BLAST of CF835190 vs. ExPASy Swiss-Prot
Match: SRP09_MOUSE (Signal recognition particle 9 kDa protein OS=Mus musculus GN=Srp9 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.667e-13
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = -2
Query:  245 SWDEFVERSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALM 448
            +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL ++TDQAQD KK+EK ++    LM
Sbjct:    6 TWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEKFHSQLMRLM 73          
BLAST of CF835190 vs. ExPASy Swiss-Prot
Match: SRP09_MACFA (Signal recognition particle 9 kDa protein OS=Macaca fascicularis GN=SRP9 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = -2
Query:  245 SWDEFVERSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALM 448
            +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL +KT+QAQD KK+EK ++    LM
Sbjct:    6 TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTEQAQDVKKIEKFHSQLMRLM 73          
The following BLAST results are available for this feature:
BLAST of CF835190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SRP09_ARATH3.798e-5090.29Signal recognition particle 9 kDa protein OS=Arabi... [more]
SRP09_MAIZE2.817e-4582.52Signal recognition particle 9 kDa protein OS=Zea m... [more]
SRP09_DICDI7.994e-1647.89Signal recognition particle 9 kDa protein OS=Dicty... [more]
SRP09_CAEEL5.729e-1449.25Signal recognition particle 9 kDa protein OS=Caeno... [more]
SRP09_HUMAN9.772e-1451.47Signal recognition particle 9 kDa protein OS=Homo ... [more]
SRP09_CANFA9.772e-1447.95Signal recognition particle 9 kDa protein OS=Canis... [more]
SRP09_MOUSE1.667e-1350.00Signal recognition particle 9 kDa protein OS=Mus m... [more]
SRP09_MACFA2.843e-1350.00Signal recognition particle 9 kDa protein OS=Macac... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06N05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835190 ID=CF835190; Name=CF835190; organism=Citrus sinensis; type=EST; length=671bp
CCCCCCAGTTTCTTTTTTTTTTTTTTTCTTCTAACCGAAATAATTTCACC
AGAATTCTATTTGGCAATGAAATTGCAAAAATTCTTTCAAATCAAACAGA
GTCTTATAACATTTGGTCAATGACAATATTCCTATCTAGCAGCCGACAAA
GTCACTGTTTCCTTCCCCTTCCTTTCTTTGCTGGCTGTGCTTCCATTTGT
TCTTTTCCAGTAACTTCTGACAAGTCCACATCAGGGCCCCGGGCCATCAA
AGCAAAAAATATGTTGTTCAGTTTCTCCATCTTCTTAGCATCCTGTGCTT
GGTCTGTCTTGAACTTAAGACACTCTTTGTTATCAGTGACTTTGAGAACC
AATTTACCATCGCAATGCCGATACTTCATGCAATATCTAGTAGATTGGGG
ATCGGCTTTGTACAACTGAACGGATCGCTCAACGAACTCGTCCCACGAAG
TTACGTAAACCATTGTTGCGCCGCTGAGAAATCGAGAGAGCAATTGATAC
AAGTAAATCTGTATATGAATCGTTACGTGCGAAGAGAGGAGTGCTTGCCT
TTTTTTTGTTTTGTTTCCTTAATACTTGAGTTTGTGGGGTTTTGGAGAAC
TGGCCTTCCCAATTTACTTGCAGTCCGGATCGAAGAGATTCACGGGGGCA
AGGCAAGAGGTCTTTTTTCAA
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