CF835210

Overview
NameCF835210
Unique NameCF835210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835210_ssr312 microsatellite CF835210_ssr312:312..323. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2450 contig Csv1_Contig2450:58..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.028e-23
Identity = 57/107 (53.27%), Postives = 68/107 (63.55%), Query Frame = -2
Query:  213 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 533
            +GE AC YA LIL DDGIA+TAEKIA +VKAAN+++ESYWP+LFAKL EK+N++DLIL+VGS                                 ESDDDMGFSLFD
Sbjct:    3 SGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILSVGSGGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 7.861e-19
Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = -2
Query:  348 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 530
            GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+NVG+
Sbjct:    5 GELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGA 65          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.027e-18
Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = -2
Query:  348 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 530
            GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+NVG+
Sbjct:    5 GELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGA 65          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.027e-18
Identity = 42/61 (68.85%), Postives = 54/61 (88.52%), Query Frame = -2
Query:  348 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 530
            GE AC+YA +IL D+GIA+T++KIA LVKAA V+IESYWP LFAK+AEK+N+ DLI+NVG+
Sbjct:    5 GELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 65          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.255e-16
Identity = 46/105 (43.81%), Postives = 58/105 (55.24%), Query Frame = -2
Query:  213 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527
            E ACTYA LILHDDG+ +TA+ I  + KAA V++E YWP+LFAKL  KK++DDLI NVG+                                   ++DMGFSLFD
Sbjct:    5 ELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLITNVGA--GGGAAPAAAAPAAGGAPAAGAAPKKEEKKEPSEEEDMGFSLFD 107          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_DROME (60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.037e-15
Identity = 47/107 (43.93%), Postives = 56/107 (52.34%), Query Frame = -2
Query:  213 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527
            E AC YA+LIL DD +AVT EKI  ++KAANV++E YWP LFAK  E  N+ DLI N+GS                                   +SDDDMGF LFD
Sbjct:    6 ELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_CAEEL (60S acidic ribosomal protein P1 OS=Caenorhabditis elegans GN=rla-1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.299e-13
Identity = 46/106 (43.40%), Postives = 54/106 (50.94%), Query Frame = -2
Query:  213 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527
            E AC YA LIL DD +A+T EKIA L+KAANV+ E YWP LFAK  E  ++ +LI +V S                                  ESDDDMGF LFD
Sbjct:    6 ELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA5_SCHPO (60S acidic ribosomal protein P1-alpha 5 OS=Schizosaccharomyces pombe GN=rpa5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = -2
Query:  213 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 533
            A E A +YA LIL D+GI +T++K+ +L KA NV++E  W ++FAK  E K+L +L+LN+GS                                 ESD+DMGF LFD
Sbjct:    3 ASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_CLAHE (60S acidic ribosomal protein P1 OS=Cladosporium herbarum GN=CLAH12 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13
Identity = 46/108 (42.59%), Postives = 57/108 (52.78%), Query Frame = -2
Query:  213 AGEQACTYATLILHDDGIAVTAEKIAALVKAANV-QIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 533
            A E A +YA LIL D+G+ +TA+K+ AL+ AA V +IE  W SLFAK  E K++ DL+LNVGS                                 ESDDDMGF LFD
Sbjct:    3 AAELASSYAALILADEGLEITADKLQALISAAKVPEIEPIWTSLFAKALEGKDVKDLLLNVGSGGGAAPAAGGAAAGGAAAVLDAPAEEKAEEEKEESDDDMGFGLFD 110          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_SCHPO (60S acidic ribosomal protein P1-alpha 1 OS=Schizosaccharomyces pombe GN=rpa1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.893e-13
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = -2
Query:  213 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 533
            A E A +Y+ LIL D+GI +T++K+ +L KAANV +E  W ++FAK  E K+L +L+LN+GS                                 ESD+DMGF LFD
Sbjct:    3 ASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109          
The following BLAST results are available for this feature:
BLAST of CF835210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RLA1_MAIZE4.028e-2353.2760S acidic ribosomal protein P1 OS=Zea mays GN=RPP... [more]
RLA11_ARATH7.861e-1970.4960S acidic ribosomal protein P1-1 OS=Arabidopsis t... [more]
RLA13_ARATH1.027e-1870.4960S acidic ribosomal protein P1-3 OS=Arabidopsis t... [more]
RLA12_ARATH1.027e-1868.8560S acidic ribosomal protein P1-2 OS=Arabidopsis t... [more]
RLA1_CHLRE1.255e-1643.8160S acidic ribosomal protein P1 OS=Chlamydomonas r... [more]
RLA1_DROME4.037e-1543.9360S acidic ribosomal protein P1 OS=Drosophila mela... [more]
RLA1_CAEEL1.299e-1343.4060S acidic ribosomal protein P1 OS=Caenorhabditis ... [more]
RLA5_SCHPO2.215e-1338.3260S acidic ribosomal protein P1-alpha 5 OS=Schizos... [more]
RLA1_CLAHE2.215e-1342.5960S acidic ribosomal protein P1 OS=Cladosporium he... [more]
RLA1_SCHPO2.893e-1338.3260S acidic ribosomal protein P1-alpha 1 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835210 ID=CF835210; Name=CF835210; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTGAGNAAATAAGCATAGAGAATGATAATATTCCTTT
TGTAATTAGAAACTTACTGTCGAAGTACACCGCGAGAAATAGAACTAAAA
CAAAAACAAAAACTGAGCTATACCACTCAGCTGCGTCCTACATTCCAATA
AAACAAAAACAGGAAAAAAAAAAGAAGAGAACAAATTCTGACTCAACTGA
ATGCGGGGTTTAATCAAACAAACTGAATCCCATATCATCATCACTTTCTT
CCTTTGGTTCTTCCTTTTTCTCCTCAGCGGCAGGGGCGGCGGCTGCGGCA
CCACCAGCAGGGGCGGCGGCGGCAACGGGTGCGGCAGCACCGCCACCGGA
GCCAACATTCAAGATGAGATCATCCAAGTTTTTCTTTTCAGCCAACTTCG
CAAAAAGGCTTGGCCAGTAAGACTCTATTTGCACATTCGCTGCCTTAACC
AAAGCCGCGATCTTCTCCGCAGTGACTGCGATTCCATCGTCGTGGAGAAT
CAAAGTGGCGTAGGTGCAAGCTTGCTCTCCGGCCATTATTGCAATTGATA
ATTCTAAAATCGCACACTAAGAGAGGCTGCGTTTGGCTTGT
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