CF835211

Overview
NameCF835211
Unique NameCF835211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835211_ssr270 microsatellite CF835211_ssr270:270..281. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2450 contig Csv1_Contig2450:57..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.120e-23
Identity = 56/109 (51.38%), Postives = 68/109 (62.39%), Query Frame = 3
Query:   54 LMAGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            + +GE AC YA LIL DDGIA+TAEKIA +VKAAN+++ESYWP+LFAKL EK+N++DLIL+VGS                                  SDDDMGFSLFD
Sbjct:    1 MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILSVGSGGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 7.953e-19
Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = 3
Query:   63 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 245
            GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+NVG+
Sbjct:    5 GELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGA 65          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.039e-18
Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = 3
Query:   63 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 245
            GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+NVG+
Sbjct:    5 GELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGA 65          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.039e-18
Identity = 42/61 (68.85%), Postives = 54/61 (88.52%), Query Frame = 3
Query:   63 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 245
            GE AC+YA +IL D+GIA+T++KIA LVKAA V+IESYWP LFAK+AEK+N+ DLI+NVG+
Sbjct:    5 GELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 65          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17
Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 3
Query:   54 LMAGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            +   E ACTYA LILHDDG+ +TA+ I  + KAA V++E YWP+LFAKL  KK++DDLI NVG+                                   ++DMGFSLFD
Sbjct:    1 MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLITNVGA--GGGAAPAAAAPAAGGAPAAGAAPKKEEKKEPSEEEDMGFSLFD 107          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_DROME (60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.085e-15
Identity = 47/107 (43.93%), Postives = 55/107 (51.40%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC YA+LIL DD +AVT EKI  ++KAANV++E YWP LFAK  E  N+ DLI N+GS                                    SDDDMGF LFD
Sbjct:    6 ELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_CAEEL (60S acidic ribosomal protein P1 OS=Caenorhabditis elegans GN=rla-1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 45/106 (42.45%), Postives = 53/106 (50.00%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC YA LIL DD +A+T EKIA L+KAANV+ E YWP LFAK  E  ++ +LI +V S                                   SDDDMGF LFD
Sbjct:    6 ELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA5_SCHPO (60S acidic ribosomal protein P1-alpha 5 OS=Schizosaccharomyces pombe GN=rpa5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 40/109 (36.70%), Postives = 57/109 (52.29%), Query Frame = 3
Query:   54 LMAGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            + A E A +YA LIL D+GI +T++K+ +L KA NV++E  W ++FAK  E K+L +L+LN+GS                                  SD+DMGF LFD
Sbjct:    1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_CLAHE (60S acidic ribosomal protein P1 OS=Cladosporium herbarum GN=CLAH12 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 45/110 (40.91%), Postives = 57/110 (51.82%), Query Frame = 3
Query:   54 LMAGEQACTYATLILHDDGIAVTAEKIAALVKAANV-QIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            + A E A +YA LIL D+G+ +TA+K+ AL+ AA V +IE  W SLFAK  E K++ DL+LNVGS                                  SDDDMGF LFD
Sbjct:    1 MSAAELASSYAALILADEGLEITADKLQALISAAKVPEIEPIWTSLFAKALEGKDVKDLLLNVGSGGGAAPAAGGAAAGGAAAVLDAPAEEKAEEEKEESDDDMGFGLFD 110          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_SCHPO (60S acidic ribosomal protein P1-alpha 1 OS=Schizosaccharomyces pombe GN=rpa1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 40/109 (36.70%), Postives = 57/109 (52.29%), Query Frame = 3
Query:   54 LMAGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            + A E A +Y+ LIL D+GI +T++K+ +L KAANV +E  W ++FAK  E K+L +L+LN+GS                                  SD+DMGF LFD
Sbjct:    1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109          
The following BLAST results are available for this feature:
BLAST of CF835211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RLA1_MAIZE3.120e-2351.3860S acidic ribosomal protein P1 OS=Zea mays GN=RPP... [more]
RLA11_ARATH7.953e-1970.4960S acidic ribosomal protein P1-1 OS=Arabidopsis t... [more]
RLA13_ARATH1.039e-1870.4960S acidic ribosomal protein P1-3 OS=Arabidopsis t... [more]
RLA12_ARATH1.039e-1868.8560S acidic ribosomal protein P1-2 OS=Arabidopsis t... [more]
RLA1_CHLRE9.722e-1742.2060S acidic ribosomal protein P1 OS=Chlamydomonas r... [more]
RLA1_DROME4.085e-1543.9360S acidic ribosomal protein P1 OS=Drosophila mela... [more]
RLA1_CAEEL1.314e-1342.4560S acidic ribosomal protein P1 OS=Caenorhabditis ... [more]
RLA5_SCHPO1.716e-1336.7060S acidic ribosomal protein P1-alpha 5 OS=Schizos... [more]
RLA1_CLAHE1.716e-1340.9160S acidic ribosomal protein P1 OS=Cladosporium he... [more]
RLA1_SCHPO2.241e-1336.7060S acidic ribosomal protein P1-alpha 1 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835211 ID=CF835211; Name=CF835211; organism=Citrus sinensis; type=EST; length=594bp
CACAAGCCAACCCCTTCCTCTCTTAGTGTGCGATTTTAGAATTATCAATT
GCACTAATGGCCGGAGAGCAAGCTTGCACCTACGCCACTTTGATTCTCCA
CGACGATGGAATCGCAGTCACTGCGGAGAAGATCGCGGCTTTGGTTAAGG
CAGCGAATGTGCAAATAGAGTCTTACTGGCCAAGCCTTTTTGCGAAGTTG
GCTGAAAAGAAAAACTTGGATGATCTCATCTTGAATGTTGGCTCCGGTGG
CGGTGCTGCCGCACCCGTTGCCGCCGCCGCCCCTGCTGGTGGTGCCGCAG
CCGCCGCCCCTGCCGCTGAGGAGAAAAAGGAAGAACCAAAGGAAGAAAGT
GATGATGATATGGGATTCAGTTTGTTTGATTAAACACCGCATTCAGTTGA
GTCAGAATTTGTTCTCTTCTTTTTTTTTTCCTGTTTTTGTTTTATTGGAA
TGTAGGACGCAGCTGAGTGGTATAGCTCAGTTTTTGTTTTTGTTTTAGTT
CTATTTCTCGCGGTGTACTTCGACAGTAAGTTTCTAATTACAAAATGAAT
ATTATCATTCTCTATGCTTATTTACTTCAAAAAAAAAAAAAAAA
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