CF835228

Overview
NameCF835228
Unique NameCF835228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2753 contig Csv1_Contig2753:451..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 2.820e-50
Identity = 100/121 (82.64%), Postives = 110/121 (90.91%), Query Frame = -2
Query:  215 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 577
            GFTK+  NQVKRTCYAQ+SQI+QIRRKMREIM+ QA +CDLK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RPA+E  PEA TEVIGA
Sbjct:  141 GFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPAEEAAPEA-TEVIGA 260          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.072e-49
Identity = 97/121 (80.17%), Postives = 106/121 (87.60%), Query Frame = -2
Query:  215 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 577
            GFTKR  NQVKRTCYAQ+SQIRQIRRKMREIM+ QA SCDLK LV KFI E+IG+EIEKAT SIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSEDVG K+E PADE + E   E++GA
Sbjct:  141 GFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVGTKVESPADETVVEGTPEIVGA 261          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.073e-49
Identity = 98/120 (81.67%), Postives = 105/120 (87.50%), Query Frame = -2
Query:  215 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 574
            FTK+  NQ K+TCYAQ+SQIRQIRRKMREIM   A SCDLK LV+KFI E IGREIEKAT SIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG K+ERPADEP+ E  TEVIGA
Sbjct:  142 FTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKLERPADEPVAEGVTEVIGA 261          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 1.185e-48
Identity = 98/121 (80.99%), Postives = 107/121 (88.43%), Query Frame = -2
Query:  215 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEAPTEVIGA 574
            FTKR  NQVKRTCYAQ+SQIRQIRRKMR+IM+ +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS EDVGVK++RPADE   E PTE+IGA
Sbjct:  142 FTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA 262          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 1.548e-48
Identity = 98/121 (80.99%), Postives = 107/121 (88.43%), Query Frame = -2
Query:  215 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPEAPTEVIGA 574
            FTKR  NQVKRTCYAQ+SQIRQIRRKM EIM+ +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +EDVGVK++RPADE + E PTE+IGA
Sbjct:  142 FTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 262          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 190.274 bits (482), Expect = 5.881e-48
Identity = 98/122 (80.33%), Postives = 108/122 (88.52%), Query Frame = -2
Query:  215 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKMERPADEPIPEAPTEVIGA 577
            GFTK+  NQ KRTCYAQ+SQIRQIRRKMREIM+ QA SCDLK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E D+G K++RPA+E + E PTEVIGA
Sbjct:  141 GFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDIGTKLDRPAEEAVAE-PTEVIGA 261          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.711e-47
Identity = 96/121 (79.34%), Postives = 105/121 (86.78%), Query Frame = -2
Query:  215 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 577
            GFTK+  NQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKAT SI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+ERP +E + E  TEV+GA
Sbjct:  141 GFTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLERPIEETMVEGETEVVGA 261          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.235e-47
Identity = 95/120 (79.17%), Postives = 105/120 (87.50%), Query Frame = -2
Query:  215 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 574
            FTK+ PNQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKAT SI+PLQNV+IRKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RPADE + EA  E+ GA
Sbjct:  142 FTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPADETVAEAEPEIPGA 261          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.038e-44
Identity = 89/110 (80.91%), Postives = 100/110 (90.91%), Query Frame = -2
Query:  251 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 577
            GFTKR PNQVKRTCYAQASQIRQIRRKM EIM  QA+SCDLK LV KFI E+IG+EIEKAT SI+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ ED+G K++RPA++
Sbjct:  141 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAED 250          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.771e-44
Identity = 96/122 (78.69%), Postives = 106/122 (86.89%), Query Frame = -2
Query:  215 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQ-AASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPEAPTEVIGA 574
            FTKR  NQVKRTCYAQ+SQIRQIR KMREIMI + A+SCDLK LV KFI E IG++IEKAT  IYPLQNVFIRKVKILKAPKFDL KLMEVHGDY +EDVGVK++RPADE + E PTE+IGA
Sbjct:  142 FTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPADE-VVEEPTEIIGA 262          
The following BLAST results are available for this feature:
BLAST of CF835228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
RS3A_HELAN2.820e-5082.6440S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A_CICAR1.072e-4980.1740S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A1_VITVI4.073e-4981.6740S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A1_ARATH1.185e-4880.9940S ribosomal protein S3a-1 OS=Arabidopsis thalian... [more]
RS3A2_ARATH1.548e-4880.9940S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A_CATRO5.881e-4880.3340S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A_DAUCA1.711e-4779.3440S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]
RS3A_TOBAC2.235e-4779.1740S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A_ORYSJ1.038e-4480.9140S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]
RS3A_BRARA1.771e-4478.6940S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835228 ID=CF835228; Name=CF835228; organism=Citrus sinensis; type=EST; length=578bp
CCCCTGAGTTTTTTTTTTTTTTTTATCTAATCCACTGGAATAAAGAATAA
GGTAACCCCTTTTAATACCACAAACCGCTGCAGCCATCTCAAATATCACC
GTAGAATAAAATATGTAAACTCAAAACAAATTTGAGTTCATCACAAACAA
AACTGCCCAAAAATTACTAGATCTGATTGGTTATAAAGACAAACTACAAA
AATTTCTTTATTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGG
CTCATCAGCTGGCCTTTCCATCTTTACACCAACATCCTCAGAGTAATCAC
CATGAACCTCCATCAACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATC
TTCACTTTGCGAATGAAAACATTTTGTAAGGGGTATATGCTTAAGGTTGC
CTTCTCAATCTCTCTTCCAATTATTTCAGCAATGAACTTTTCGACCAAGC
CCTTAAGATCACAGGATGCTGCCTGAGCAATCATGATCTCCCTCATCTTG
CGGCGAATCTGTCTAATCTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAAC
CTGATTTGGAAGTCTCTTGGTGAATCCA
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