CF835231

Overview
NameCF835231
Unique NameCF835231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5600 contig Csv1_Contig5600:111..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF835231 vs. ExPASy Swiss-Prot
Match: BETL1_ARATH (Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.918e-41
Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 2 
Query:   53 RSREGLSTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVXXXXXXXXXXYMWSKMFRR 400
            RSREGLSTR  AGS+EIQLRIDP+++DLDDEITGL  QV+QL+N+AQEI SEA FQ+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVV          Y+WSKMF+R
Sbjct:   22 RSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQVRQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVLFALLVFFVLYIWSKMFKR 137
[Close]
BLAST of CF835231 vs. ExPASy Swiss-Prot
Match: BETL2_ARATH (Bet1-like protein At1g29060 OS=Arabidopsis thaliana GN=At1g29060 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.066e-39
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 2 
Query:   53 RSREGLSTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVXXXXXXXXXXYMWSKMFRR 400
            RSREGLSTR  +GS+EIQLRIDP+++DLDDEI GL  QV+QL+N+AQEI SEA  Q+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVV          YMWSKMF+R
Sbjct:   19 RSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVRQLKNIAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFALLLFFILYMWSKMFKR 134
The following BLAST results are available for this feature:
BLAST of CF835231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BETL1_ARATH4.918e-4169.83Bet1-like protein At4g14600 OS=Arabidopsis thalian... [more]
BETL2_ARATH2.066e-3968.10Bet1-like protein At1g29060 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06O03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835231 ID=CF835231; Name=CF835231; organism=Citrus sinensis; type=EST; length=631bp
TTCTCACAGAGGCGGTGCCGGCGGGCCATTTTACGGGGGCGCCGCTCCTT
ACAGATCAAGAGAGGGCCTCAGCACTAGACCGGTCGCCGGTTCAGATGAA
ATACAGTTGCGGATCGATCCTGTGAATGCTGACCTGGACGATGAGATCAC
TGGTCTCCGTAGCCAAGTTAAGCAGTTGAGAAATGTTGCTCAAGAGATAC
ATTCAGAAGCATCATTTCAGAAGGATTTTTTAGATCAATTGCAAATGACT
CTGATCAAAGCTCAAGCAGGTGTGAAGAACAACATGAGGAGATTAAACAA
GAGCATTGTCAAACATGGTTCTAACCATATAATGCATGTGGTTCTTTTTG
CTCTATTTCTTTTCTTCATTCTCTACATGTGGTCCAAAATGTTCAGACGA
TGAAGTTAGAATGGCTGGTGCGCACCATGCTAAGAATTCGATGACTGAAG
GTGAAAGCTCCCTGGTTCTGCACAAGGTTTCTAGACTGAAGTGCTAGCAC
TTCATTTCCTGATGATGTTGCAGATGTAATGACTTTCTGAAATTGTTTGT
TTTAGGTCTTTCATGTATCATTACAAGTTAGCTTCTGTGTGAATGATGGG
ATATCAGTGGGTAAAAGTATTCGCTAGGTTT
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