CF835234

Overview
NameCF835234
Unique NameCF835234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3190 contig Csv1_Contig3190:334..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.412e-20
Identity = 57/97 (58.76%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPR-----RFNPYMGYRGRRPYVPPY 273
            E+Q +F SCG+VNRVTIL DKF G PKGFAY+EF E   V  AL LN S LH R LKV PKRTNVPGM + R R     R     GYRGR     PY
Sbjct:   70 ELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.288e-16
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 252
            E++ +F  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  183 ELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRSRYRAR 265          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.288e-16
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 252
            E++ +F  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  187 ELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.288e-16
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 252
            E++ +F  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  187 ELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.288e-16
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 252
            E++ +F  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  178 ELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.288e-16
Identity = 45/98 (45.92%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 273
            +++ +F SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:  108 DLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.288e-16
Identity = 45/98 (45.92%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 273
            +++ +F SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:  108 DLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.989e-16
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 252
            E++ +F  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  177 ELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 259          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 252
            E++ +F  CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  178 ELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.136e-15
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 201
            E++ YF  CG ++RVTIL DKF G PKG+AY+EF    +VQ A++L+ES   GR +KVLPKRTN PG+
Sbjct:  154 ELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221          
The following BLAST results are available for this feature:
BLAST of CF835234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PAB2_SCHPO3.412e-2058.76Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
PABP2_MOUSE2.288e-1652.94Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PABP2_HUMAN2.288e-1652.94Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN2.288e-1652.94Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PAB2A_XENLA2.288e-1652.94Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]
EPA2B_XENLA2.288e-1645.92Embryonic polyadenylate-binding protein 2-B OS=Xen... [more]
EPA2A_XENLA2.288e-1645.92Embryonic polyadenylate-binding protein 2-A OS=Xen... [more]
PAB2B_XENLA2.989e-1652.94Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
PABP2_XENTR6.658e-1651.76Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
EPAB2_RAT1.136e-1557.35Embryonic polyadenylate-binding protein 2 OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835234 ID=CF835234; Name=CF835234; organism=Citrus sinensis; type=EST; length=535bp
GAAGTGCAGCATTATTTCCAATCCTGTGGTACTGTAAACAGGGTAACTAT
TCTGACAGACAAGTTTGGCCAGCCAAAGGGTTTTGCTTATGTGGAATTCC
TTGAAATAGATGCTGTTCAAGAGGCTCTCCAGTTGAATGAGTCTGAATTA
CATGGCCGTCAACTGAAGGTTTTACCTAAGAGGACAAATGTCCCTGGTAT
GAAGCAGTATCGTCCAAGGCGTTTCAATCCTTACATGGGGTACCGAGGCA
GGAGGCCCTATGTACCTCCTTATTTCTATTCACCTTATGGATATGGGAAG
GTTCCGAGGTTCAGAAGGCCAATGAGGTACATGCCCTACTACTAGCAGAT
TGTGCTCCTGTTGAAGATGGTGACATTTGTGGATCATCCATAAACTGAAA
AATTCAATGTATCATGGTGCTTATGTATCCTGCTTTAGATAGGAAACAAA
GGATTTATTAGCTACATGTTTATTATTGATGTCTTGAATGATCAAACATT
ATTAGCATGAACTTTATGGAAAAAAAAAAAAAAAA
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