CF835235

Overview
NameCF835235
Unique NameCF835235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length409
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1705 contig Csv1_Contig1705:209..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835235 vs. ExPASy Swiss-Prot
Match: RK31_ARATH (50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana GN=RPL31 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.905e-30
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = -1 
Query:  200 VYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLSEIMEIPVLKGEIVLP 409
            VYCNGELVMTTGGT+KEYVVDVWSGNH FYLG RSA++VDADQVEKFR++F GLSEIMEIPVLKGEI++P
Sbjct:   63 VYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIMEIPVLKGEIIMP 132
The following BLAST results are available for this feature:
BLAST of CF835235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RK31_ARATH1.905e-3085.7150S ribosomal protein L31, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06O07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835235 ID=CF835235; Name=CF835235; organism=Citrus sinensis; type=EST; length=409bp
TTTTTTTTTTTTTTTTTCGAGCAACCAAACGCATGAAAAATATAATCCCC
TTTTAATGTTTGTCGTTCAAATATCAACACATCATTCCACCTAATAAAAT
CCATCCACTCACAAACATTCCCCAATTACCTCAAAACAACGCCGTACCAA
ATTTCTACTTCTTCTTGCCACCTTTAGCGGCCGCGGACTTGCGCTTAGGC
GGCAACACAATCTCTCCTTTAAGCACGGGAATTTCCATAATCTCAGACAA
TCCTCCGAACTTCTGACGGAACTTCTCGACTTGGTCGGCGTCGACGACAA
CAGCAGAGCGGCCGCCGAGGTAAAACGCATGGTTTCCCGACCAGACATCC
ACCACGTACTCCTTCTGGGTCCCACCCGTCGTCATTACGAGCTCACCGTT
ACAGTACAC
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