CF835236

Overview
NameCF835236
Unique NameCF835236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length410
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1705 contig Csv1_Contig1705:208..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835236 vs. ExPASy Swiss-Prot
Match: RK31_ARATH (50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana GN=RPL31 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.783e-28
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = 2
Query:    2 VYCYCELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLSEIMEIPVLKGEIVLP 211
            VYC  ELVMTTGGT+KEYVVDVWSGNH FYLG RSA++VDADQVEKFR++F GLSEIMEIPVLKGEI++P
Sbjct:   63 VYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIMEIPVLKGEIIMP 132          
The following BLAST results are available for this feature:
BLAST of CF835236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RK31_ARATH1.783e-2882.8650S ribosomal protein L31, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06O07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835236 ID=CF835236; Name=CF835236; organism=Citrus sinensis; type=EST; length=410bp
AGTGTACTGCTACTGTGAGCTCGTAATGACGACGGGTGGGACCCAGAAGG
AGTACGTGGTGGATGTCTGGTCGGGAAACCATGCGTTTTACCTCGGCGGC
CGCTCTGCTGTTGTCGTCGACGCCGACCAAGTCGAGAAGTTCCGTCAGAA
GTTCGGAGGATTGTCTGAGATTATGGAAATTCCCGTGCTTAAAGGAGAGA
TTGTGTTGCCGCCTAAGCGCAAGTCCGCGGCCGCTAAAGGTGGCAAGAAG
AAGTAGAAATTTGGTACGGCGTTGTTTTGAGGTAATTGGGGAATGTTTGT
GAGTGGATGGATTTTATTTGATCGAATGATGTGTTGATATTTGAACGACA
AACATTATTATCAAATTATATTTTTCATGCGTTTGGTTGCTCTGAAAAAA
AAAAAAAAAA
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