CF835243

Overview
NameCF835243
Unique NameCF835243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6351 contig Csv1_Contig6351:133..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.680e-33
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 2
Query:   65 AHINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGGML 304
            AHINLKVKGQDGNE  F IKR TQLKKLMNAYCD QSV++N++AFLFDGRRLRG QTPDELEMEDGDEIDA+LHQTGG L
Sbjct:   19 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 7.797e-33
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 2
Query:   44 KSPTINQAHINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGG 298
            K P    AHINLKVKGQDGNE  F IKR TQLKKLMNAYCD QSV++NS+AFLFDGRRLR  QTPDEL+MEDGDEIDA+LHQTGG
Sbjct:    9 KKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 3.757e-19
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   68 HINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGG 298
            HINLKV GQD NE  F IK+ T+  KLM  YC  Q   +NSL FL DG R+R  QTP EL+MEDGD+I+A+L Q GG
Sbjct:   35 HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO2_RAT (Small ubiquitin-related modifier 2 OS=Rattus norvegicus GN=Sumo2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.279e-16
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 2
Query:   53 TINQAHINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGGM 301
            T N  HINLKV GQDG+   F IKR T L KLM AYC+ Q + +  + F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   12 TENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO2_PIG (Small ubiquitin-related modifier 2 OS=Sus scrofa GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.279e-16
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 2
Query:   53 TINQAHINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGGM 301
            T N  HINLKV GQDG+   F IKR T L KLM AYC+ Q + +  + F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   12 TENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO2_MOUSE (Small ubiquitin-related modifier 2 OS=Mus musculus GN=Sumo2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.279e-16
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 2
Query:   53 TINQAHINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGGM 301
            T N  HINLKV GQDG+   F IKR T L KLM AYC+ Q + +  + F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   12 TENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO2_MACFA (Small ubiquitin-related modifier 2 OS=Macaca fascicularis GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.279e-16
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 2
Query:   53 TINQAHINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGGM 301
            T N  HINLKV GQDG+   F IKR T L KLM AYC+ Q + +  + F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   12 TENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO2_HUMAN (Small ubiquitin-related modifier 2 OS=Homo sapiens GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.279e-16
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 2
Query:   53 TINQAHINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGGM 301
            T N  HINLKV GQDG+   F IKR T L KLM AYC+ Q + +  + F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   12 TENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO2_CRIGR (Small ubiquitin-related modifier 2 OS=Cricetulus griseus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.279e-16
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 2
Query:   53 TINQAHINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGGM 301
            T N  HINLKV GQDG+   F IKR T L KLM AYC+ Q + +  + F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   12 TENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO2_CHICK (Small ubiquitin-related modifier 2 OS=Gallus gallus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.279e-16
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 2
Query:   53 TINQAHINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGGM 301
            T N  HINLKV GQDG+   F IKR T L KLM AYC+ Q + +  + F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   12 TENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
The following BLAST results are available for this feature:
BLAST of CF835243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMT3_ORYSJ2.680e-3385.00Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
SMT3_ARATH7.797e-3380.00Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
PMT3_SCHPO3.757e-1959.74Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
SUMO2_RAT2.279e-1651.81Small ubiquitin-related modifier 2 OS=Rattus norve... [more]
SUMO2_PIG2.279e-1651.81Small ubiquitin-related modifier 2 OS=Sus scrofa G... [more]
SUMO2_MOUSE2.279e-1651.81Small ubiquitin-related modifier 2 OS=Mus musculus... [more]
SUMO2_MACFA2.279e-1651.81Small ubiquitin-related modifier 2 OS=Macaca fasci... [more]
SUMO2_HUMAN2.279e-1651.81Small ubiquitin-related modifier 2 OS=Homo sapiens... [more]
SUMO2_CRIGR2.279e-1651.81Small ubiquitin-related modifier 2 OS=Cricetulus g... [more]
SUMO2_CHICK2.279e-1651.81Small ubiquitin-related modifier 2 OS=Gallus gallu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835243 ID=CF835243; Name=CF835243; organism=Citrus sinensis; type=EST; length=539bp
CAGATACTGTTCGGCGTCACGAACACTCCTCAAGAGGAAGATAAAAAGCC
CAACGATCAATCAGGCTCACATCAATCTCAAAGTCAAGGGCCAGGATGGG
AATGAGGGGGTCTTCGGGATCAAACGACCCACCCAACTAAAGAAGCTTAT
GAATGCGTACTGTGATATACAATCTGTGGAGCTGAACTCCCTTGCCTTCT
TGTTTGATGGTCGCCGTCTTCGAGGACACCAAACCCCTGATGAGCTGGAA
ATGGAAGATGGTGATGAGATTGATGCCCTGCTGCACCAAACCGGAGGAAT
GCTGATGGTCTAATTATGTACTACTCGTTTGAGAGCTTATTAGTAGTATT
ATTGTAAAACTATCAATGGATGGATGCAAGTTATGCAGAGGCTCAAGATT
GCGTATTTGTGATCTACACCATTATGTTTGTGTTACCTAAGTATGTACCT
CTTTCTTCCAGAGCCCTGATCGTTGCTGTTTATATCCAGCTAGAATTGGG
ATATATCTGTGATGATTGGATCAAAGCCAAAAAAAAAAA
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