CF835267

Overview
NameCF835267
Unique NameCF835267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.864e-56
Identity = 99/139 (71.22%), Postives = 119/139 (85.61%), Query Frame = 2
Query:   56 MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPSQK 472
            MG CL+KR HD +D E  +E AGGNV L+TTK+ WDQK+SEAS++GKIV+ANFSA WCGPC+ IAP++ ELSE YPSLMFL++DVDEL +FS SW+IKATPTFFFL+DGQQVDKLVGANKPEL KK+ A +DS+ PS K
Sbjct:    1 MGLCLAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDSLPPSDK 139          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.602e-53
Identity = 97/137 (70.80%), Postives = 119/137 (86.86%), Query Frame = 2
Query:   56 MGTCLSKRQHDEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPS 466
            MG+C+SK + D+ D  H VEF+GGNV L+TTK+ WD K++EA ++GKIV+ANFSATWCGPC+++APFF ELSEK+ SLMFLLVDVDEL +FS+SWDIKATPTFFFLK+GQQ+ KLVGANKPELQKKV + +DSV  S
Sbjct:    1 MGSCVSKGKGDD-DSVHNVEFSGGNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKVTSIIDSVPES 136          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.600e-28
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 2
Query:  119 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 442
            A GNV    + + W  K+ EA    ++V  +F+ATWCGPCR+I P F ELS+K+P + FL VDVDEL + +  WD++A PTF F+KDG+ VDK+VGA K +L++KVAA
Sbjct:    2 AEGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAA 109          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 51/110 (46.36%), Postives = 78/110 (70.91%), Query Frame = 2
Query:  125 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 454
            G V  V T D W++ + +   + K+++ +F+A+WCGPC+ IA F++EL++K P++ FL VDVDEL   +T W ++A PTF FLK+G+ VDK+VGA K ELQ+ +A  + S
Sbjct:    5 GQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISS 114          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25
Identity = 53/114 (46.49%), Postives = 78/114 (68.42%), Query Frame = 2
Query:  125 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPS 466
            G V     KD +D +M++A + GK+VI +F+A+WCGPCR IAP F+E ++K+P  +FL VDVDEL E +  ++++A PTF F+KDG + DK+VGA K +LQ  +   V +   S
Sbjct:    6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAAS 119          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25
Identity = 53/114 (46.49%), Postives = 78/114 (68.42%), Query Frame = 2
Query:  125 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDSVVPS 466
            G V     KD +D +M++A + GK+VI +F+A+WCGPCR IAP F+E ++K+P  +FL VDVDEL E +  ++++A PTF F+KDG + DK+VGA K +LQ  +   V +   S
Sbjct:    6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAAS 119          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.614e-25
Identity = 49/105 (46.67%), Postives = 77/105 (73.33%), Query Frame = 2
Query:  125 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 439
            G V    T + W++++ +A++   +V+ +F+A+WCGPCR IAPFF++L++K P+++FL VD DEL   ++ W I+A PTF FLK+G+ +DK+VGA K ELQ  +A
Sbjct:    6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIA 110          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 46/105 (43.81%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  125 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 439
            G V    T + W++++ + +    +++ +F+A+WCGPCR IAPF +EL++K P++ FL VDVDEL   +  W +++ PTF FLK+G+ +DK+VGA K ELQ+ +A
Sbjct:    6 GQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIA 110          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 43/93 (46.24%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  158 WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            W++   +  +  K+V+ +F+A+WCGPCR IAP  +++++K P ++FL VDVDEL   S  W ++A PTF F+KDG++VD++VGA K ELQ+ +
Sbjct:   23 WNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTI 115          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.586e-22
Identity = 42/94 (44.68%), Postives = 70/94 (74.47%), Query Frame = 2
Query:  158 WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 439
            W++K  +A   GK+++ +F+A+WCGPCR+I P+ SEL++K+P + F  VDVD+L + +  + ++A P+F  LK+GQ+V+++VGA K EL  K+A
Sbjct:   16 WNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIA 109          
The following BLAST results are available for this feature:
BLAST of CF835267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
TRXH_POPJC2.864e-5671.22Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
TRXH9_ARATH6.602e-5370.80Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_PICMA9.600e-2851.85Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH2_TOBAC1.174e-2546.36Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH_ORYSJ1.533e-2546.49Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI1.533e-2546.49Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH1_ARATH2.614e-2546.67Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_RICCO7.120e-2343.81Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_TOBAC1.214e-2246.24Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_FAGES1.586e-2244.68Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835267 ID=CF835267; Name=CF835267; organism=Citrus sinensis; type=EST; length=689bp
GTTGTCTGGTCTTTTGTCTGTTAACTGTTAGCTTTCAGGCCTTCAAAGCT
TCAATATGGGAACGTGTTTGTCCAAGCGTCAACATGATGAGGAGGATGGT
GAACACCCTGTTGAGTTTGCTGGTGGGAATGTGAGTCTTGTTACTACCAA
AGATATATGGGACCAAAAGATGTCAGAAGCTAGTAAGGAAGGGAAGATAG
TGATTGCGAACTTCAGCGCAACATGGTGTGGTCCTTGTAGAATGATTGCA
CCATTCTTCAGCGAGCTATCTGAGAAATACCCTTCGTTAATGTTCCTTTT
GGTCGATGTTGATGAACTAGTTGAGTTCAGCACTTCATGGGATATCAAAG
CCACTCCAACTTTCTTCTTTCTTAAAGATGGGCAGCAAGTTGACAAGCTA
GTTGGAGCAAACAAGCCAGAGCTACAGAAGAAGGTAGCGGCGGCTGTAGA
CTCAGTTGTCCCAAGTCAAAAATGATGATTACAATGGTCGTCCAATCTGT
GTTAGCATTGCCACCAATCTGTGTATGTTTCTGTGCTAGTAGTTAGATAA
GATTGCTTGATTGCAAGATTTTTTTTTTTTTTTGGTTGTATATTTATGCA
TTACTTTCTGTAGAAATGGCTGCTTATGTGATTTGTGATTCAATCCAACC
CTGTTCATGAAACAATGAAATGGAAAAAAAAAAAAAAAA
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