CF835270

Overview
NameCF835270
Unique NameCF835270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835270_ssr75 microsatellite CF835270_ssr75:75..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10456 contig Csv1_Contig10456:59..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835270 vs. ExPASy Swiss-Prot
Match: YKJ2_CAEEL (GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 33/111 (29.73%), Postives = 61/111 (54.95%), Query Frame = 2 
Query:  137 FLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFD--CQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIE 463
            F+     A  T    V + VKL +Y E+ CP ++ F    L K ++ +  L+ ++L++ P+G A+     + F+  CQHGP+EC +N +  C ID +   +++ P + C++
Sbjct:  120 FIEYEPKAGPTIKEPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQ 230
The following BLAST results are available for this feature:
BLAST of CF835270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YKJ2_CAEEL9.685e-1129.73GILT-like protein C02D5.2 OS=Caenorhabditis elegan... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06P04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835270 ID=CF835270; Name=CF835270; organism=Citrus sinensis; type=EST; length=574bp
AACCCATTCTCTCACTTTTTCACTTAAGAAGAAAGGGGAAAAAAAATAGC
CCTAATTTACGGATTCATCTATGGCTTCTTCTTCTTCTTCCTCAAAAAAA
GCCTTATCTCTTGTCTTTTACATTCCCAAGATCTGCTTCTTGTCTGGCTC
TGTTTCAGCTTCTAGAACTTCACCTTCAGATGTTAACAGTAAAGTCAAGT
TAGGTCTGTACTACGAGTCTTTGTGTCCATACAGTGCCAATTTCATTATC
AATTACTTGGTTAAAATCTTTGAAGATGTTGATCTGTTATCCATCGTTGA
TCTCCATCTTTCTCCCTGGGGGAACGCCAAAATCAGAGCCAACAACAGCA
CCTTTGATTGCCAGCATGGCCCTTCTGAATGCTTGCTGAACACTGTGGAA
GCTTGTGCGATTGATAGTTGGCCTGAATTGAACAAGCATTTCCCGTTTAT
CTACTGCATTGAGAGTTTAGTGTACGAGCATAAGTATTCTCAGTGGGAAA
CATGCTTTGATAAATTGGAACTGGATCCGAAACCAATTGTTGATTGCTAT
ACCAGTGGATATGGAACACAGCTT
back to top