CF835280

Overview
NameCF835280
Unique NameCF835280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5653 contig Csv1_Contig5653:20..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835280 vs. ExPASy Swiss-Prot
Match: Y2881_DICDI (Uncharacterized protein DDB_G0288155 OS=Dictyostelium discoideum GN=DDB_G0288155 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.898e-12
Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = -3
Query:  346 GMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSML 648
            G G+TL DG VVE++G + AGSL+     I SGE WGG+PAKF+R++T ++ + + +      NL++ H  + +KS  E+  +  L +K+ +     D +L
Sbjct:  144 GTGSTLCDGSVVEKNGFLEAGSLLTAGKTIKSGEYWGGSPAKFIRQVTKDDESQLEKIIEQNINLSEQHEKQTSKSAKELNND--LLQKYVKNRTRSDHIL 242          
The following BLAST results are available for this feature:
BLAST of CF835280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2881_DICDI3.898e-1236.63Uncharacterized protein DDB_G0288155 OS=Dictyostel... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06P09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835280 ID=CF835280; Name=CF835280; organism=Citrus sinensis; type=EST; length=650bp
TTTTTTTTTTCGATAAAACACCAACATACATGATGCTGGTGGCATTAGTT
TCGGGCAGAGAAGAAAATAGAGTTCTTAAACAGTCACAAGAAGGGCGGAG
CTGAAAGCTAAAAAGGAGCCACTAAAAAGGAGCCACGAATCTATTCTACA
TGTCTGGTATTATTGGGAACAAGGATGACCCCCTTCTTCATGTATTTGCA
CGTAACAACAAATATTCCTTGATTTCAAATCTCCAGATTCAAACTCAGAA
AAAACTACCTAGGAAAAATATTATTTCTGCAACGACTTTGGATCTTTGAT
GCTATCAGGAACAATAATTTCTTGAGGAGTTTCACGAACAACACCGAGCA
TTGAGTCGTATTCCTCATCCCGACGTGCAAACTTCTTGCGAAGAACTTTC
TCAAATTCAATCTCATCGAAGGACTTCGCATTCTCAGCTGCATGAACTTG
TGCCAAGTTGGAATAATTGGTGGCTGACTGGGAAATAAAGGCTATTTCTT
CATCAGTGAGCTTTCTCAGGAACTTTGCTGGATTGCCTCCCCATACCTCT
CCAGAAGGGATCCTGGTATTCTGCCTCACAAGAGATCCAGCAGCAACCAT
GCCATGTCTCTCAACAACAACACCATCAAGTAGTGTTGCTCCCATGCCAA
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