CF835282

Overview
NameCF835282
Unique NameCF835282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835282_ssr163 microsatellite CF835282_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig940 contig Csv1_Contig940:567..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER3_ARMRU (Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.518e-53
Identity = 106/170 (62.35%), Postives = 124/170 (72.94%), Query Frame = -2
Query:  141 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNIATRSSSSEGDLVSS 650
            +VGLN   DLVALSG HTFGRAQC+F + RLY+FN T +PDPT+D T L QLR LCPQ GNG VL NFDV TP+ FD +Y++NLR  KGL+QSDQELFSTPGADT  +V  +  N  AFF  FV +MIRMGNL+PLTG QGEIR NCR VN       R   ++  +VSS
Sbjct:  183 DVGLNRPSDLVALSGGHTFGRAQCQFVTPRLYNFNGTNRPDPTLDPTYLVQLRALCPQNGNGTVLVNFDVVTPNTFDRQYYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTFAFFGAFVDAMIRMGNLRPLTGTQGEIRQNCRVVNSR----IRGMENDDGVVSS 348          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER22_ARATH (Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 7.838e-53
Identity = 98/151 (64.90%), Postives = 119/151 (78.81%), Query Frame = -2
Query:  198 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 650
            +VGLN   DLVALSG HTFGRAQC+F + RLY+FN T  PDP+++ T L +LR LCPQ GNG VL NFDV TPDAFD++Y++NLR  KGL+QSDQELFSTPGADT  +V  +  + + FF+ F+ +MIRMGNL+PLTG QGEIR NCR VN
Sbjct:  183 DVGLNRTSDLVALSGGHTFGRAQCQFVTPRLYNFNGTNSPDPSLNPTYLVELRRLCPQNGNGTVLVNFDVVTPDAFDSQYYTNLRNGKGLIQSDQELFSTPGADTIPLVNQYSSDMSVFFRAFIDAMIRMGNLRPLTGTQGEIRQNCRVVN 333          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER15_IPOBA (Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.978e-52
Identity = 100/151 (66.23%), Postives = 118/151 (78.15%), Query Frame = -2
Query:  198 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 650
            NVGLN   DLVALSGAHTFGRAQC+ FS RL++F+ TG PDPT++ T L  L+++CPQGG+G  + N D  TPD FDN YFSNL+  +GLLQSDQELFST GA T AIV +F  NQTAFF++FV SMI MGN+ PLTG+ GEIR NCRR N
Sbjct:  178 NVGLNVN-DLVALSGAHTFGRAQCRTFSPRLFNFSNTGNPDPTLNTTYLATLQQICPQGGSGFTVTNLDPTTPDTFDNNYFSNLQTNRGLLQSDQELFSTSGAPTIAIVNNFSANQTAFFESFVQSMINMGNISPLTGSNGEIRSNCRRPN 327          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PERE5_ARMRU (Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.111e-50
Identity = 95/151 (62.91%), Postives = 115/151 (76.16%), Query Frame = -2
Query:  198 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 650
            +VGLN   DLVALSG HTFGRA+C F + RLY+FN T +PDPT++ + L  LR LCP+ GNG VL NFDV TP+ FDN++++NLR  KGL+QSDQELFSTPGADT  +V  +  N  +FF  F  +MIRMGNL+PLTG QGEIR NCR VN
Sbjct:  154 DVGLNRPSDLVALSGGHTFGRARCLFVTARLYNFNGTNRPDPTLNPSYLADLRRLCPRNGNGTVLVNFDVMTPNTFDNQFYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTLSFFGAFADAMIRMGNLRPLTGTQGEIRQNCRVVN 304          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.111e-50
Identity = 94/152 (61.84%), Postives = 118/152 (77.63%), Query Frame = -2
Query:  192 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGN 647
            VGLN   DLVALSGAHTFGRA+C  F++RL++F+ TG PDPT++ TLL  L++LCPQ G+ + + N D+ TPDAFDN YF+NL+   GLLQSDQELFST G+ T AIV  F  NQT FF+ F  SMI MGN+ PLTG+ GEIRL+C++VNG+
Sbjct:  185 VGLNTN-DLVALSGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVNGS 335          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER23_ARATH (Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.025e-49
Identity = 95/151 (62.91%), Postives = 112/151 (74.17%), Query Frame = -2
Query:  198 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 650
            +VGLN   DLVALSG HTFG+AQC+F + RLY+FN T +PDP+++ T L +LR LCPQ GNG VL NFD  TP  FD +Y++NL   KGL+QSDQ LFSTPGADT  +V  +  N   FF  FV +MIRMGNLKPLTG QGEIR NCR VN
Sbjct:  183 DVGLNRPSDLVALSGGHTFGKAQCQFVTPRLYNFNGTNRPDPSLNPTYLVELRRLCPQNGNGTVLVNFDSVTPTTFDRQYYTNLLNGKGLIQSDQVLFSTPGADTIPLVNQYSSNTFVFFGAFVDAMIRMGNLKPLTGTQGEIRQNCRVVN 333          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PERA2_ARMRU (Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.813e-48
Identity = 91/152 (59.87%), Postives = 117/152 (76.97%), Query Frame = -2
Query:  192 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGN 647
            VGLN   DLVALSGAHTFGRA+C  F++RL++F+ T  PDPT++ TLL  L++LCPQ G+ + + N D+ TPDAFDN YF+NL+   GLLQSDQELFST G+ T A+V  F  NQT FF+ F  SMI MGN+ PLTG+ GEIRL+C++V+G+
Sbjct:  155 VGLNTN-DLVALSGAHTFGRARCGVFNNRLFNFSGTNGPDPTLNSTLLSSLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNNGLLQSDQELFSTLGSATIAVVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVDGS 305          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.813e-48
Identity = 92/155 (59.35%), Postives = 115/155 (74.19%), Query Frame = -2
Query:  189 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 650
            NVGLN   DLVALSG HTFG+ QC+F  DRLY+F+ TG PDPT++ T L+ LR+ CP+ GN +VL +FD++TP  FDNKY+ NL+ +KGL+QSDQELFS+P A DT  +V  +      FF  FV +M RMGN+ PLTG QGEIRLNCR VN N+
Sbjct:  163 NVGLNRPSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRQQCPRNGNQSVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSYADGTQTFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNS 317          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER2_ARMRU (Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.592e-48
Identity = 94/158 (59.49%), Postives = 116/158 (73.42%), Query Frame = -2
Query:  183 RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNI 653
            RNVGL+   DLVALSG HTFG+ QC+F  DRLY+F+ +GKPDPT+D++ L  LR+ CP+ GN +VL +FD++TP  FDNKY+ NL+  KGL+QSDQELFS+P A DT  +V  +   Q  FF  FV +MIRMGNL P TG QGEIRLNCR VN    I
Sbjct:  177 RNVGLDRPSDLVALSGGHTFGKNQCQFIMDRLYNFSNSGKPDPTLDKSYLSTLRKQCPRNGNLSVLVDFDLRTPTIFDNKYYVNLKENKGLIQSDQELFSSPDASDTIPLVRAYADGQGKFFDAFVEAMIRMGNLSPSTGKQGEIRLNCRVVNSKPKI 334          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 7.592e-48
Identity = 93/156 (59.62%), Postives = 114/156 (73.08%), Query Frame = -2
Query:  189 RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 653
            RNVGLN   DLVALSG HTFG+ QC+F  DRLY+F+ TG PDPT++ T L+ LR LCP  GN + L +FD++TP  FDNKY+ NL  +KGL+QSDQELFS+P A DT  +V  F  +   FF  FV +M RMGN+ PLTG QG+IRLNCR VN N+
Sbjct:  183 RNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNS 338          
The following BLAST results are available for this feature:
BLAST of CF835282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
PER3_ARMRU3.518e-5362.35Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3... [more]
PER22_ARATH7.838e-5364.90Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=... [more]
PER15_IPOBA2.978e-5266.23Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1[more]
PERE5_ARMRU8.111e-5062.91Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1... [more]
PER53_ARATH8.111e-5061.84Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PER23_ARATH4.025e-4962.91Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=... [more]
PERA2_ARMRU5.813e-4859.87Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1... [more]
PER1C_ARMRU5.813e-4859.35Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER2_ARMRU7.592e-4859.49Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3... [more]
PER1A_ARMRU7.592e-4859.62Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835282 ID=CF835282; Name=CF835282; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTCCATTAACTCAAGTTTGATAGTTAATTTATTTGAAAACACC
TCTCATGTTTCAGGCCAAACGATAAGATTAAATTCGAGTTTGTTAAGCAC
AAAAACTCTCTCGCATATGCCGCAAGCTAGCTTATTAGAAAGAGCTGACC
AAATCACCCTCCGATGATGATGATCTTGTTGCAATATTATTGTTTCCATT
GACCCTCCTGCAGTTCAATCTAATCTCCCCTTGATTTCCTGTCAGTGGTT
TCAAATTGCCCATTCTTATCATTGAGATCACAAAGTTTTTAAAGAAAGCA
GTCTGGTTCCTCCCAAAGTCCTCGACAATGGCAGCGGTATCGGCACCAGG
AGTCGAAAACAACTCTTGATCACTCTGCAGAAGGCCTTTGCGGAGTCTAA
GATTGGAGAAGTATTTGTTGTCGAAAGCATCAGGTGTTTTGACATCAAAA
TTAGCAAGAACGGCGCCGTTTCCACCCTGTGGGCATAGTTCCCTCAGTTG
CTTTAAGAGGGTTCTGTCCACTGTTGGGTCTGGCTTGCCAGTTTTGTTGA
AATCGTATAATCTGTCACTGAAAAATTTGCACTGAGCCCTTCCAAACGTG
TGAGCTCCGGAGAGTGCAACAAGATCAAACTTGTCATTGAGGCCAACATT
TCTA
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