CF835288

Overview
NameCF835288
Unique NameCF835288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig942 contig Csv1_Contig942:275..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835288 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.794e-23
Identity = 61/165 (36.97%), Postives = 92/165 (55.76%), Query Frame = 2
Query:    2 YYIASAIWXXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIKLTLSPYNNST-IVRESTDLNLRFSVLLSGRD-CCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVRWASVCESCVKLCNNVGRSFEDGVQRLVLVRDDEPAF 490
            YY+ S+I                 CP  V+Q  SD+ NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK+EK G     YK     SVC+SC  LC+++GR  +D  Q  + + D+E A+
Sbjct:   45 YYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVL--GYKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLALSDNEWAW 204          
BLAST of CF835288 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.706e-18
Identity = 50/140 (35.71%), Postives = 78/140 (55.71%), Query Frame = 2
Query:   74 CPLDVIQLPSDMQNGIKLTLSPYN-NSTIVRESTDLNLRFSVLLSGRDCCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVRWASVCESCVKLCNNVGRSFEDGVQRLVLVRDDEPAF 490
            CP  V+Q   ++ +   L   P N    +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+ +WFK+E+     G YK+V   +VC SC   C +VG   +   +R + + D   AF
Sbjct:   76 CPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSDKPFAF 212          
BLAST of CF835288 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.044e-14
Identity = 56/162 (34.57%), Postives = 80/162 (49.38%), Query Frame = 2
Query:    2 YYIASAIWXXXXXXXXXXXXXXXY-CPLDVIQLPSDMQNGIKLTLSPYNN--STIVRESTDLNLRFSVLLSGRDCCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVRWASVCESCVKLCNNVGRSFED-GVQRLVLVRD 475
            Y++ SAIW                 CPL V+Q P D  NG  +  S   N    IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K G  P +YK     S   + +  CNNV   F+   ++RL+L  D
Sbjct:   20 YFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFD--NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAG-LPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTND 173          
The following BLAST results are available for this feature:
BLAST of CF835288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC2.794e-2336.9721 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU2.706e-1835.71Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA4.044e-1434.57Latex serine proteinase inhibitor OS=Carica papaya... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06P13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835288 ID=CF835288; Name=CF835288; organism=Citrus sinensis; type=EST; length=642bp
GTACTACATAGCCTCAGCCATCTGGGGAGCTGGCGGTGGTGGAGTTAGCC
TACACGGTGGCAGAAACGGATATTGTCCGCTGGACGTTATCCAATTACCT
TCTGATATGCAAAATGGAATCAAATTAACACTGTCACCGTATAACAATTC
TACAATTGTCCGAGAATCCACTGATCTCAACTTGAGATTCTCAGTGTTGC
TATCTGGACGTGACTGTTGTAACGAACAACCATTGTGGAAAGTTGATAAT
TATGACGCTGCATCAGGCAAATGGTTTATAACAACCGGGGGACTTGATGG
CCACCCTGGAGCTGAAACTTTGCTAAATTGGTTTAAGCTTGAGAAAATTG
GAAATTTTCCAGGTACATACAAAATCGTTCGTTGGGCATCCGTTTGCGAG
TCTTGTGTCAAACTCTGCAACAACGTTGGCCGTTCGTTTGAGGATGGCGT
TCAACGTCTGGTTCTGGTTCGTGATGATGAGCCGGCATTTCCTGTTGTGT
TAATTCCCGCTACAGAAAGATCAACGTCTGTGTAATCAATGTACCCTAAC
CAGCTAGCGGTATTATTGTTCTAAATAACGGACCAGGCTAGCTGCTCTTT
AATCTCTAGGATTAAAATTATGAATAAGATACCCTGTGATCC
back to top