CF835294

Overview
NameCF835294
Unique NameCF835294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig723 contig Csv1_Contig723:1..399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.282e-42
Identity = 83/102 (81.37%), Postives = 94/102 (92.16%), Query Frame = 2
Query:   98 MPIYRIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            MPI RIAIGTPGEAS PDA++A  AEFFSM+IFVFAGQGSGMA+ KLT  G +TPAGL++ASL+HAFALFVAVSVGAN+SGGHVNPAVTFGAF+GG+ITLLR
Sbjct:    1 MPINRIAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLR 102          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.187e-42
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 2
Query:   98 MPIYRIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            MP+ RIA+G PGE SHPD  KA +AEF S LIFVFAG GSGMAFSKLTDGGA+TPAGLI+ASLAHA ALFVAVSVGANISGGHVNPAVTFGAFVGG+I+LL+
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLK 102          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.873e-42
Identity = 84/102 (82.35%), Postives = 93/102 (91.18%), Query Frame = 2
Query:   98 MPIYRIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            MPI  IA+GTP EA+HPD LKAGLAEF S  IFVFAG GSG+A++KLT+ GA+TPAGLISAS+AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITLLR
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLR 102          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.418e-41
Identity = 81/102 (79.41%), Postives = 92/102 (90.20%), Query Frame = 2
Query:   98 MPIYRIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            MP+ RIA+G PGE SHPD  KA +AEF SMLIFVFAG GSGMAFSKLTDGG +TP+GLI+ASLAHA ALFVAV+VGANISGGHVNPAVTFGAFVGG+I+L++
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVK 102          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.492e-40
Identity = 83/102 (81.37%), Postives = 90/102 (88.24%), Query Frame = 2
Query:   98 MPIYRIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            MPI  IA+G+  E  HP ALKA LAEF S LIFVFAGQGSGMAFSKLT GGA+TPAGLI+A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITL R
Sbjct:    1 MPIRNIAVGSHQEVYHPGALKAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFR 102          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 4.561e-40
Identity = 83/102 (81.37%), Postives = 92/102 (90.20%), Query Frame = 2
Query:   98 MPIYRIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            MPI  IA+GTP EA+HPD LKAGLAEF S  IFVFAG GSG+A++KLT+ GA+TPAGLISAS+AHAFALFVAVSVGANISGGHVNPAV FGAFVGG+ITLLR
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLR 101          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 82/102 (80.39%), Postives = 89/102 (87.25%), Query Frame = 2
Query:   98 MPIYRIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            MPI RIA+G+  E  HP ALKA  AEF S LIFVFAGQGSGMAFSKLT GG +TPAGLI+A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITL R
Sbjct:    1 MPINRIALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFR 102          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.956e-39
Identity = 79/102 (77.45%), Postives = 90/102 (88.24%), Query Frame = 2
Query:   98 MPIYRIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            MPI  IAIG P EA+ PDALKA LAEF S LIFV AG GSGMAF+KLT+ GA+TP+GL++A++AHAF LFVAVSVGANISGGHVNPAVTFGAF+GG+ITLLR
Sbjct:    1 MPIRNIAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLR 102          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 4.418e-35
Identity = 74/103 (71.84%), Postives = 86/103 (83.50%), Query Frame = 2
Query:   98 MPIYRIAIG-TPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            MP   IAIG    E  HP+AL+A LAEF S LIFVFAG GSG+AF+K+TD GA+TP+GL++A+LAHAF LFVAVSVGANISGGHVNPAVTFG  +GG+ITLLR
Sbjct:    1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLR 103          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.390e-27
Identity = 57/97 (58.76%), Postives = 77/97 (79.38%), Query Frame = 2
Query:  110 RIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLL 400
            ++A G+ G++    ++KA +AEF + L+FVFAG GS +A+ +LT+GGA  PAGL++ ++AHA ALFV VSV ANISGGH+NPAVTFG  VGGHIT+L
Sbjct:    3 KLAFGSVGDSFSATSIKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITIL 99          
The following BLAST results are available for this feature:
BLAST of CF835294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TIP13_ARATH1.282e-4281.37Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP12_MAIZE2.187e-4282.35Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP1_MEDTR4.873e-4282.35Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP12_ORYSJ1.418e-4179.41Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP11_ORYSJ3.492e-4081.37Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP1_MEDSA4.561e-4081.37Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP11_MAIZE1.327e-3980.39Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP11_ARATH2.956e-3977.45Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP12_ARATH4.418e-3571.84Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP21_MAIZE3.390e-2758.76Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835294 ID=CF835294; Name=CF835294; organism=Citrus sinensis; type=EST; length=403bp
GCAATATAACCCCTATAGAAANACNGAGCCAGCAAGCTTGTAAGAAGCCT
TCCCTTCTAAAACAAAATCGTTTTTCTTGACAAAATTTTCGATAAAAATG
CCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAAGCCATCCTGA
TGCGTTAAAGGCGGGGCTAGCTGAGTTTTTCTCAATGCTTATTTTTGTTT
TCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAACGGATGGCGGG
GCGTCCACACCGGCCGGTCTTATATCTGCATCACTGGCTCATGCATTTGC
CCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTGGGGGTCACGTGA
ACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACATTACATTGTTG
AGG
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