CF835297

Overview
NameCF835297
Unique NameCF835297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8642 contig Csv1_Contig8642:370..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835297 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.346e-58
Identity = 105/116 (90.52%), Postives = 112/116 (96.55%), Query Frame = -3
Query:  318 SGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 665
            SGRMCAEAI+EGSE G RM+DE DLRKYLEKWDKTYWPTYKVLD+LQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYK+V PGNP+EDLKLAVNTIGSLVRANALRREMDKL++
Sbjct:  349 SGRMCAEAIVEGSEMGKRMVDESDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVAPGNPIEDLKLAVNTIGSLVRANALRREMDKLSV 464          
BLAST of CF835297 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.257e-55
Identity = 102/116 (87.93%), Postives = 112/116 (96.55%), Query Frame = -3
Query:  318 SGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 665
            SGRMCAEAI+EGS+NG +MIDEGDLRKYLEKWDKTY PTY+VLDVLQKVFYRSNPAREAFVEMC DEYVQKMTFDSYLYKRV PG+PLED+KLAVNTIGSLVRANALRRE++KL++
Sbjct:  352 SGRMCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467          
BLAST of CF835297 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.876e-52
Identity = 95/116 (81.90%), Postives = 109/116 (93.97%), Query Frame = -3
Query:  318 SGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 665
            SGRMCAEAI+ GS NGTRM++E DLR+YL ++D+ YWPTYKVLDVLQKVFYRSN AREAFVEMCAD+YVQ+MTFDSYLYKRVVPGNPL+D+KLAVNTIGSLVRA ALRREM+K+T+
Sbjct:  348 SGRMCAEAIVAGSANGTRMVEESDLRRYLAEFDRLYWPTYKVLDVLQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATALRREMEKVTL 463          
BLAST of CF835297 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.066e-33
Identity = 66/107 (61.68%), Postives = 82/107 (76.64%), Query Frame = -3
Query:  345 SGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANAL 665
            S RMCAE I+  S NG R+  E DL++Y+++WDK Y  TY VLD+LQ+VFYR++  REAFVEMC+D  VQK+TFDSYLYK VVP NPL  +K+   TIGSL+R NAL
Sbjct:  299 SARMCAETIVATSNNGQRVPTEADLKQYIKQWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405          
The following BLAST results are available for this feature:
BLAST of CF835297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CHLP_TOBAC6.346e-5890.52Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ARATH2.257e-5587.93Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ8.876e-5281.90Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY37.066e-3361.68Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835297 ID=CF835297; Name=CF835297; organism=Citrus sinensis; type=EST; length=667bp
TTTTTTTTTTTTTTACTCAGTTTCTTAAGAAAATACAAGTATCCAACTAA
ATCATTCATCAAACTAAAGTTACAAAAGAGGAATCCGTTTGACGTCTCTT
CTAAGATTTGTTATGGATACCCAATTTCACATTTATACTGTATCATAGGA
TGCATTAATGCAAATTAATCTATAAATGCATAAAACTATTCTCTTACATA
ATTAGACTGAAGGGTGGGGGGGAGCCATAGGATCAAGTTTGATCTTTTTC
TCTTACAACATGCTCAAAAGAAACATAAATAAAAGAATCAAACTCTTTTT
CCCTCTCCTTATATTCAGATGGTCAGCTTATCCATCTCCCTCCTAAGTGC
ATTAGCTCTCACCAAGCTCCCAATAGTATTCACAGCCAACTTCAAATCCT
CCAATGGGTTTCCGGGCACCACTCTTTTATACAAATAGCTATCAAATGTC
ATCTTCTGCACATACTCATCGGCACACATCTCCACAAATGCTTCCCTCGC
TGGATTCGATCGGTAAAACACCTTCTGCAATACATCCAGTACCTTATAAG
TTGGCCAGTAAGTCTTATCCCACTTCTCCAAATACTTCCTCAAGTCCCCT
TCATCGATCATCCTGGTTCCATTCTCTGACCCTTCAATGATGGCCTCCGC
ACACATTCTTCCACTCT
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