CF835298

Overview
NameCF835298
Unique NameCF835298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7325 contig Csv1_Contig7325:403..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835298 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.705e-39
Identity = 76/98 (77.55%), Postives = 88/98 (89.80%), Query Frame = 2
Query:   14 LSPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERADKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 307
            +SPSN+AVDIG+TLK HEYIGMVRREVLDAYLRERA+K+GA+VINGLF+KMD P N++ PY L+YTEYDG  G  G K+T+EVDAVIGADGANSRVAK
Sbjct:  123 ISPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPENWDSPYTLHYTEYDGKTGATGTKKTMEVDAVIGADGANSRVAK 220          
BLAST of CF835298 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.462e-39
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 2
Query:   14 LSPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERADKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 307
            +SPSNVAVDIGQTLKPHEYIGMVRREVLDAYLR+RA + GASV+NGLF+KMD+P+    PYVL+YT YD    G GEKRTLEVDAVIGADGANSRVAK
Sbjct:  120 ISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRDRAAEAGASVLNGLFLKMDMPKAPNAPYVLHYTAYDSKTNGAGEKRTLEVDAVIGADGANSRVAK 217          
BLAST of CF835298 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.232e-31
Identity = 66/99 (66.67%), Postives = 78/99 (78.79%), Query Frame = 2
Query:   14 LSPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERADKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGV-GEKRTLEVDAVIGADGANSRVAK 307
            +SPSNVAVDIG TL PHEYIGMVRREVLDAYLR RA+  GA V+NGLF++ + P+     YV++Y  YD + G   GEKRT EVDA++GADGANSRVAK
Sbjct:  118 ISPSNVAVDIGGTLAPHEYIGMVRREVLDAYLRSRAEGAGAEVVNGLFLRYEAPKEPNGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGANSRVAK 216          
BLAST of CF835298 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.688e-26
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 2
Query:   14 LSPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERADKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 307
            +SPSN+ V+IGQTLK  EYIGM RREVLD +LRERA+K G  VING   K+D+P     PY L+Y ++    G  GE + L+VD VIGADGANSR+AK
Sbjct:   70 ISPSNIEVNIGQTLKDDEYIGMCRREVLDGFLRERAEKLGTKVINGTVYKLDIPSKDSDPYTLHYADH-SVGGTTGEMKILKVDVVIGADGANSRIAK 166          
The following BLAST results are available for this feature:
BLAST of CF835298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CHLP_ARATH1.705e-3977.55Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_TOBAC8.462e-3979.59Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ2.232e-3166.67Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY33.688e-2659.18Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06P19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835298 ID=CF835298; Name=CF835298; organism=Citrus sinensis; type=EST; length=308bp
CGAAGATGAACCTTTATCGCCGTCGAACGTGGCGGTGGACATCGGGCAGA
CCCTGAAGCCGCACGAGTATATCGGGATGGTGAGGCGGGAGGTTCTGGAC
GCGTATTTGAGGGAGAGGGCGGACAAGAACGGGGCGAGCGTGATTAACGG
GTTATTCATGAAGATGGATTTGCCGAGGAACTTTGAGCAGCCGTACGTTT
TGTATTATACGGAGTACGATGGGACAAAGGGCGGCGTCGGTGAGAAGAGG
ACGCTGGAGGTTGATGCTGTTATCGGAGCTGATGGTGCTAACTCCAGAGT
TGCCAAGT
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