CF835305 | Citrus Genome Database

Overview


Name	CF835305
Unique Name	CF835305
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	657

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9834	contig	Csv1_Contig9834:200..846.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: CALM_SPIOL (Calmodulin OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  331 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 657
            GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   41 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: CALM_MEDSA (Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  331 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 657
            GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   41 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: CALM_LILLO (Calmodulin OS=Lilium longiflorum PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  331 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 657
            GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   41 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -1

Query:  331 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 561
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: CALM_HORVU (Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  331 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 657
            GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   41 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -1

Query:  331 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 561
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: CALM_HELAN (Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  331 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 657
            GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   41 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: CALM_EUPCH (Calmodulin OS=Euphorbia characias PE=2 SV=4)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  331 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 657
            GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   41 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -1

Query:  331 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 561
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: CALM_BRYDI (Calmodulin OS=Bryonia dioica PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  331 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 657
            GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   41 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -1

Query:  331 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 561
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: CALM7_ARATH (Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  331 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 657
            GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   41 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -1

Query:  331 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 561
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: CALM2_SOYBN (Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  331 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 657
            GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   41 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -1

Query:  331 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 561
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: CALM1_PETHY (Calmodulin-1 OS=Petunia hybrida GN=CAM81 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  331 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 657
            GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   41 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -1

Query:  331 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 561
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

The following BLAST results are available for this feature:

BLAST of CF835305 vs. ExPASy Swiss-Prot

BLAST of CF835305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 390


Match Name	E-value	Identity	Description
CALM_SPIOL	1.175e-56	100.00	Calmodulin OS=Spinacia oleracea PE=1 SV=2	[more]
CALM_MEDSA	1.175e-56	100.00	Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2	[more]
CALM_LILLO	1.175e-56	100.00	Calmodulin OS=Lilium longiflorum PE=2 SV=2	[more]
CALM_HORVU	1.175e-56	100.00	Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2	[more]
CALM_HELAN	1.175e-56	100.00	Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3	[more]
CALM_EUPCH	1.175e-56	100.00	Calmodulin OS=Euphorbia characias PE=2 SV=4	[more]
CALM_BRYDI	1.175e-56	100.00	Calmodulin OS=Bryonia dioica PE=2 SV=2	[more]
CALM7_ARATH	1.175e-56	100.00	Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 ...	[more]
CALM2_SOYBN	1.175e-56	100.00	Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2	[more]
CALM1_PETHY	1.175e-56	100.00	Calmodulin-1 OS=Petunia hybrida GN=CAM81 PE=2 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS02_06P23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P23, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF835305 ID=CF835305; Name=CF835305; organism=Citrus sinensis; type=EST; length=657bp
TTTTTTTTTTTTTTTTAGAGGAAAAACATTAAGTCATCACATATCAATTT
CTTATCCACAAAATCTCGAAATAAGAAATAGGGCAGATCAACGAGTCACT
CATTTAACAGAAACAATGTTCACAGAAGAGCGGAAAAAAACTAAAACATT
AAAAAATTGCTCAAAAGATCCCGCCCCCAGATAAATTGAAGCAGGAGACA
ACATGCTTCCTTTAGCTTGACCTCAGAGTTATCAAATTAAAATTTATAAA
AAAGGAAACTAGGGAACCAATTATATTAATCAACCAATTTCTTCTTTTCC
CAGGAAGTTTTGGTTGGGTGGAGTCACTTACTTAGCCATCATAACCTTGA
CAAATTCCTCGTAATTTATCTGGCCATCACCATCGACATCAGCTTCCCTT
ATCATCTCATCGACTTCCTCATCAGTAAGCTTCTCCCCTAGGTTTGTCAT
CACATGGCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGA
AAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCCTTCATC
TTCCTGGCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCCATTACC
ATCAGCATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAGTGGGGT
TCTGACC