CK932600

Overview
NameCK932600
Unique NameCK932600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932600_ssr39 microsatellite CK932600_ssr39:39..53. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4327 contig Csv1_Contig4327:170..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK932600 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.915e-23
Identity = 44/62 (70.97%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:  217 IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 402
            IDCGG C  RC L SRP LCNRACGTCC RC CVPPGT+GN E C  CY  +TTHGN+ KCP
Sbjct:   44 IDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETC-PCYASLTTHGNKRKCP 104
[Close]
BLAST of CK932600 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.599e-21
Identity = 48/81 (59.26%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:  160 HAGVGQLVVRGVTRRLMQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 402
            HA     V  GV +     IDCGG CK RCS  SRPNLC RAC +CC RC CVPPGTAGN  LC  CY  +TT G R KCP
Sbjct:   25 HAAEDSQVGEGVVK-----IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKCP 99
[Close]
BLAST of CK932600 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.653e-21
Identity = 47/81 (58.02%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:  160 HAGVGQLVVRGVTRRLMQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 402
            HA  G  V  GV +     IDCGG CK RCS  SR  LC RAC +CC RC CVPPGT+GN  LC  CY  +TTHG R KCP
Sbjct:   25 HAADGAKVGEGVVK-----IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGGRLKCP 99
[Close]
BLAST of CK932600 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.145e-20
Identity = 40/62 (64.52%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:  217 IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 402
            IDCG  C  RC L  RP LC+RACGTCC RC CVPPGT GN + C  CY  +TTHG R KCP
Sbjct:   38 IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKCP 98
The following BLAST results are available for this feature:
BLAST of CK932600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNAK2_SOLTU2.915e-2370.97Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA3_ARATH1.599e-2159.26Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH4.653e-2158.02Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA1_ARATH5.145e-2064.52Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004531_G04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932600 ID=CK932600; Name=CK932600; organism=Citrus sinensis; type=EST; length=571bp
GGGGAGTTAGCTACTTAGCGTTCGGAATTAAGATAGCAAGCAGCAGCAGC
AGCGATGGCAGTACGCGTGCTTCTTCTGTTGGGGATTTTGCTCTTCTGTG
TTGCAGTTGCAGAGGTTTCATCTACTCTGAAGAAAGAAGATGATAGAGAT
GGAGTCCAGCATGCTGGTGTTGGCCAGCTTGTTGTGAGAGGTGTAACCAG
AAGGCTTATGCAAGACATAGACTGTGGAGGGTTGTGCAAACAGAGGTGCA
GCCTTCACTCAAGGCCAAACTTGTGTAACAGAGCATGCGGCACGTGTTGT
GTAAGATGCAAGTGCGTGCCACCTGGCACCGCGGGTAACAGGGAGCTTTG
TGGGAGTTGCTATACTGACATGACTACCCATGGAAACAGGACTAAGTGCC
CATAGGCCCATGGGCTTCTGACTCCAGACTGGCCTGAACCCATCTGGGTT
GTACATATCTTTTCTCTTGGAACTTTTGTAACCTAAGTGCGACTGTTTAA
AAGTGGGCTATGGGCTGTCTAATAATAATTATAATTTGTGTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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